XLOC_003532 (si:ch73-226l13.2)


Basic Information

Item Value
gene id XLOC_003532
gene name si:ch73-226l13.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29975830 ~ 29981972 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006902
ACAAATCATTCGAGCAGCGCTGAGATCAGCATGGCAGACAAGATCGGATGTGATTCAAACATTGTAAAAGCAGAAGAGTGTAAATCTGAGGACACCTGTGCCACAAAACGTGAGATGAAAATCAGATTCAGCCTGTCGGTAATAAGCGAGGATGTTTTGGATACAGCCTCACTACCAGACGACTATGAGGAGGAGCACAACGATTGTTTTCTTGATGATTCATCACTTGTGGCCCTGGCTAACATGACCCTGAGTGTGGTTGATGACCAAGATCCCGATGCTGATGACCCTTTCTGCAGCTGTGATCAGTCCTTTAATGAAATGGTCATCACTCCTGACCAAGCGGATTATGCATGTATTTCTCTAGAAATCAAGAGACtgattaaagaaaaaagaaatatgtaCCTGAAGTCAAAAGAAGAATGCAAGTTTGTTTCTCCAGGCGGAACAAATGACATATTTTTGGAGGACACCATGTCAGCAAAAATCACCATCTTCCATGTCATGGTCGCTGAAGACTTGAATAAAGCTAAAGCTGTTGTGTTGAACTTTACTGACACCGAAAACTTCTTCTGCTGTATCAACAATGGGGAAGAGACTAAGTTAACAATTAAAAGGTATAAGCAAGAACAGCTGCGCAACTCTACAAGTGACCCAGTAAAGCCCTCTCTTGTTTTCTACATGTCTCAAACCCCGGATGGTTTCTATCATTTTGAGTCTGCTCTCCACAGAGGATGGTTCCTTCACACTGTAAACTGCAAtgtgaaaatgcaaaaatgtgatCGTAAAACCACTGGTAACCAATTCAACTTCATCGCAAGTGACTAGACATCAACTACTTTATATTAAGTCATATTTAGGATTTTATTTAGAAGGTGTCACTGTTTCCTTTCACACTATTACATTGAGCTACTTTTAATTATAAT
>TCONS_00006903
TATAATTGCATAAACTGCATGTACTTTTTTTCCAAAAGAACACTTTGTAGTCTATACTGAACATGATAATGATTACACAAACATGCCATATTCAGACATAGGTCTAGTGGTAATGAAGAATGAGTTGATTCAAGCCTTTTCTTTTGCTTCATTTTAATTATGAAACACATAGCTGTGCTTTGCTGAAAGTTGGGAAGAGATTTTTGCGAAGGGGTTTTGGAAATGTGACTATTAAGAGAAGGTCTTTGTCATTGTAAATAAGTCGAATTGTAAATATTCAAATggacatttattgtttattatttaaaagaaagcACAATCCCAATCTTCTGATGAATTAATCTTTGAATTTTATTTGTTTCAGTTTCTCTAGAAATCAAGAGACtgattaaagaaaaaagaaatatgtaCCTGAAGTCAAAAGAAGAATGCAAGTTTGTTTCTCCAGGCGGAACAAATGACATATTTTTGGAGGACACCATGTCAGCAAAAATCACCATCTTCCATGTCATGGTCGCTGAAGACTTGAATAAAGCTAAAGCTGTTGTGTTGAACTTTACTGACACCGAAAACTTCTTCTGCTGTATCAACAATGGGGAAGAGACTAAGTTAACAATTAAAAGGTATAAGCAAGAACAGCTGCGCAACTCTACAAGTGACCCAGTAAAGCCCTCTCTTGTTTTCTACATGTCTCAAACCCCGGATGGTTTCTATCATTTTGAGTCTGCTCTCCACAGAGGATGGTTCCTTCACACTGTAAACTGCAAtgtgaaaatgcaaaaatgtgatCGTAAAACCACTGGTAACCAATTCAACTTCATCGCAAGTGACTAGACATCAACTACTTTATATTAAGTCATATTTAGGATTTTATTTAGAAGGTGTCACTGTTTCCTTTCACACTATTACATTGAGCTACTTTTAATTATAATGTAGGAAACACTGGTTATATTGTTGTAGTATTTAATCAAACCTCTTAGAAAAACATATAACTGCTTTACAATATTAACCCCTATTTACATTGGTACCGTATGTATAAGCTTGCAATTTCTATTTTCATAGTTACAGTAATTGTATCTTATTATTATGTGTTCATACTATATATCTTTCCTATATCAtgcattcaaataaatatttgtaaagacA

Function

symbol description
si:ch73-226l13.2 Predicted to enable cytokine activity. Predicted to act upstream of or within immune response and inflammatory response. Predicted to be located in extracellular space.

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-18 Predicted to enable cytokine activity. Predicted to act upstream of or within immune response and inflammatory response. Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDARG00000095939

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006902 False 926 mRNA 0.40 5 29975830 29981758
TCONS_00006903 True 1146 lncRNA 0.33 3 29979257 29981972

Neighbor

gene id symbol gene type direction distance location
XLOC_003531 il1fma coding upstream 3676 29965822 ~ 29972154 (+)
XLOC_003530 NA coding upstream 69001 29905248 ~ 29906829 (+)
XLOC_003529 grpr coding upstream 98740 29856032 ~ 29877090 (+)
XLOC_003528 dynlt3 coding upstream 181522 29790626 ~ 29794308 (+)
XLOC_003527 rpgrb coding upstream 185608 29770966 ~ 29790222 (+)
XLOC_003533 nhsb coding downstream 17442 29999414 ~ 30090019 (+)
XLOC_003534 NA coding downstream 109183 30091155 ~ 30103960 (+)
XLOC_003535 cdkl5 coding downstream 179196 30161168 ~ 30232133 (+)
XLOC_003536 rs1a coding downstream 262384 30244356 ~ 30252098 (+)
XLOC_003537 NA coding downstream 270968 30252940 ~ 30253557 (+)
XLOC_003369 CR854846.2 misc upstream 13852748 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17263834 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17281567 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17290231 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17295802 12679732 ~ 12680028 (+)
XLOC_003524 NA non-coding upstream 384634 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 404302 29566746 ~ 29571528 (+)
XLOC_003521 CR450796.1 non-coding upstream 623609 29352101 ~ 29352221 (+)
XLOC_003520 NA non-coding upstream 767637 29207886 ~ 29208193 (+)
XLOC_003541 NA non-coding downstream 316731 30298703 ~ 30300054 (+)
XLOC_003550 CR855274.1 non-coding downstream 992799 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 1065882 31047854 ~ 31055288 (+)

Expression


Co-expression Network