G1599247 (LOC106609955)


Basic Information

Item Value
gene id G1599247
gene name LOC106609955
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 19594384 ~ 19595503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1831135
ATTGTAGCTTATATTTCCAATGGACAGTTTCTTACAGAAAGGAATACGTTTTCAATGAAACTACAAAAAACGTTTCATGTAGAAACTACCAATCTGAAGTATATGTACTGGACTGAACAGAAGTTTAGAAGTGTGCTATAGGTATCCTATGAATGCTCTCTGGCTGTGGTCTGATTATCTTCTCTTCTAACAGAAGGTTGCACTTGCGCACTCCATTACAGTGAAGTAATCATGGGTAGGGAGAAGTTTAAACCCTATTTTACACCAGTCCATTCCTTTTACATCCATGAGGGGGAGTAAATGAGTGCAGAATAAGGGTACAGAAATTGGAACACATTCCCATTTTATCTGTCACACACTAAAACGatgtgaggacacacacacacacacacacacacacactattgctgcTGACAGTATCCCTTTGCAAGTCACTCAGTTCAATTTGacctgttctctcttcctctgcattGCATAATTCTTCATTGACCTTTTAGGAGGCACTAGGGTGTTACTCAGCCCTACTCTCCTCTTCCTAGACTGCTGACCCTCCTCTTCAGGGTCTCCTCCCTGGTTTTGGTGAAAGTTCTGGCGACCCGTGTATGAAAATCCCCCCCCGTTGGGGTCAGCTTGGTCCGATCCAGGATCGTCACCCGCAGGGGGGTCATAGTCATTGGGAATGATGGAGCTTTGGAGGTCGCTGTCATGGGCAAACTTGCATTTGATCCCGAACCTGCAGCGTCCGTCCTTCCTGTACGCCACGCACATCCTCTTGCCTCCTATCTGGGAGGGCCGGGCCAGCAGAGTGAGAGGGACGTGCTTCTGCAAGACATTGAGCTTCTGGTCGGCTTGCGCCTTGAAGGGGTTGGCGAATACGCCACTCTTGGACGAGGCCccgaggggtggaggggggagttTGTGggagaggggtccGGGACTCAGAGGGGGGTGCCATACAGGCAGGAGGAGGGCGTTTAGGTTTTAGTTGAGATACGGTGTCCCCCTCTTCCTCTGGGTCGAAGTCACAGTCTGACTCACTGGAGGCTGACCCGGACTCTAGGAGGAAATTGCGGCCCTTCTTCTGGGTCTCTCCA

Function

NR:

description
uncharacterized protein LOC110497533

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1831135 True 1094 lncRNA 0.50 2 19594384 19595503
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110497534 LOC106609954 coding upstream 2942 19585072 ~ 19591442 (+)
LOC110497473 NA coding upstream 235934 19343155 ~ 19358450 (+)
LOC110497472 LOC106609985 coding upstream 266035 19326377 ~ 19328349 (+)
LOC110497470 LOC106609950 coding upstream 291510 19293883 ~ 19302874 (+)
LOC110497468 glb1 coding upstream 367964 19221360 ~ 19226420 (+)
LOC110497532 LOC106609956 coding downstream 8245 19603748 ~ 19620028 (+)
LOC110497531 LOC106609957 coding downstream 31351 19626854 ~ 19642015 (+)
LOC118941465 LOC106609958 coding downstream 106314 19701817 ~ 19702322 (+)
LOC110498684 LOC106609958 coding downstream 107200 19702703 ~ 19707315 (+)
LOC110497530 cdk2ap2 coding downstream 127470 19722973 ~ 19729929 (+)
G1599283 NA non-coding upstream 29620 19559778 ~ 19564764 (+)
G1599271 NA non-coding upstream 51164 19543014 ~ 19543220 (+)
G1599267 NA non-coding upstream 56756 19537175 ~ 19537628 (+)
G1599229 NA non-coding upstream 142731 19451405 ~ 19451653 (+)
G1599224 NA non-coding upstream 145743 19448428 ~ 19448641 (+)
G1599305 NA non-coding downstream 12075 19607578 ~ 19607876 (+)
G1599310 NA non-coding downstream 15998 19611501 ~ 19611775 (+)
G1599314 NA non-coding downstream 19694 19615197 ~ 19615434 (+)
G1599317 NA non-coding downstream 32449 19627952 ~ 19628229 (+)
G1599186 NA other upstream 175867 19392291 ~ 19418517 (+)
G1598961 LOC107681197 other upstream 260934 19333020 ~ 19333450 (+)
G1598960 NA other upstream 262164 19331741 ~ 19332220 (+)
G1598786 NA other upstream 561208 19032885 ~ 19033176 (+)
G1599434 LOC106609964 other downstream 252379 19847882 ~ 19848518 (+)
LOC110497526 NA other downstream 270687 19866114 ~ 19874626 (+)
LOC110497521 LOC106602766 other downstream 449089 20039547 ~ 20046898 (+)
G1600166 NA other downstream 815170 20410673 ~ 20410899 (+)

Expression

G1599247(LOC106609955) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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G1599247(LOC106609955) Expression in each Bioproject

Bar chart with 11 bars.
G1599247(LOC106609955) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network