G1600041


Basic Information

Item Value
gene id G1600041
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 20160506 ~ 20163140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1832036
tcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttatttcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacgtaactcaccacgcaccatctacgggaggtctagaacaggtttctaaagtttcggaactctaggtccgacggttcttttttagctccaacaaagctaactattggagccactgtctgtctctacgcaccccaatacgtccctccatccaagttgtgttttagtgcaatttttttttcctttgattttttttgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcaccatgtctatcaaactgcatgcagtgtatgggtaaacacttttaggggcattttaaccacttccggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaattttgtggtgcaggctatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaacactgttttactgtgaagggttaatgccacacggtcaaggttaggcttgttcagatcgggaggaccttaggaacattcctgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctaatattctaatggttgctgcgcctagaccgagcgagctacggtcaagcgggatagctcgttgaactcagcacagtctggagactatggtgatgccattttttgtgttgatttcagaatgccattttggtgatggtccctctctgtttaaacatattg
>TU1832038
tcttgcgactctgggacatttctaaatgtcgtcattttcgtgatgcaaaaatgaattgaagttatttcaaatgtacgaggctgtttctcggtccgagaaccttctagagccacgtaactcaccacgcaccatctacgggaggtctagaacaggtttctaaagtttcggaactctaggtccgacggttcttttttagctccaacaaagctaactattggagccactgtctgtctctacgcaccccaatacgtccctccatccaagttgtgttttagtgcaatttttttttcctttgattttttttgggaaaaatgactgatttacagttcatgggggttgcctaatcacacatatgaagttttggaaagatcagacttttttaacccttcgaaacagcccctgagacaccaattatggcacttccggttggcacaggaagttataaatcaacacatatcctcattggggtatgctgttacagaatcctgagttttaagtccttacgttaagaattgactgatctacacagggttgaatgcaccatgtctatcaaactgcatgcagtgtatgggtaaacacttttaggggcattttaaccacttccggttggtccaggaagcttagaatcaacacaggtagacctcatagtggcctgatggactggtaccgaagacaggttcatacggcattcataacccacataggcctcaggttgaattttgtggtgcaggctatgtattcctatggggagagatgacactgtaatctgtgagatcaaaaaacactgttttactgtgaagggttaatgccacacggtcaaggttaggcttgttcagatcgggaggaccttaggaacattcctgtggtggaatttttcttctcaccctaacggttctctcactgtcactcaaaagcaaatgacattgtggggcaggcttcattttgggcctaatattctaatggttgctgcgcctagaccgagcgagctacggtcaagcgggatagctcgttgaactcagcacagtctggagactatggtgatgccattttttgtgttgatttcagaatgccattttggtgatggtccctctctgtttaaacatattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1832036 False 1107 lncRNA 0.44 2 20160506 20163140
TU1832038 True 1107 lncRNA 0.44 2 20160506 20163140

Neighbor

gene id symbol gene type direction distance location
trnak-uuu-127 NA coding downstream 165840 19994594 ~ 19994666 (-)
LOC110498680 LOC106609964 coding downstream 294469 19841386 ~ 19866037 (-)
doc2d LOC106609963 coding downstream 356199 19751809 ~ 19804307 (-)
LOC110497528 LOC106609961 coding downstream 419486 19737907 ~ 19741020 (-)
LOC110497529 LOC100136072 coding downstream 423833 19666386 ~ 19751340 (-)
LOC110497518 LOC106609978 coding upstream 40210 20203350 ~ 20274981 (-)
adra1b adra1b coding upstream 256916 20420056 ~ 20440924 (-)
LOC110497516 LOC106609982 coding upstream 960887 21124027 ~ 21128524 (-)
LOC110497514 LOC106610028 coding upstream 1600026 21763166 ~ 21790562 (-)
LOC110497512 LOC106610027 coding upstream 1636115 21799255 ~ 21820806 (-)
G1600018 NA non-coding downstream 45308 20114957 ~ 20115198 (-)
G1600016 LOC106609977 non-coding downstream 49420 20110803 ~ 20111086 (-)
G1599995 NA non-coding downstream 92911 20067214 ~ 20067595 (-)
G1599990 NA non-coding downstream 104844 20055457 ~ 20055662 (-)
G1599988 NA non-coding downstream 110021 20050173 ~ 20050485 (-)
G1600043 NA non-coding upstream 3544 20166684 ~ 20168077 (-)
G1600074 NA non-coding upstream 110103 20273243 ~ 20273487 (-)
G1600083 NA non-coding upstream 118235 20281375 ~ 20281641 (-)
G1600095 NA non-coding upstream 138767 20301907 ~ 20302180 (-)
G1600030 NA other downstream 23945 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 51715 20107915 ~ 20108791 (-)
G1599758 LOC106609957 other downstream 518503 19638760 ~ 19642003 (-)
G1599760 LOC106609957 other downstream 523479 19636018 ~ 19637027 (-)
G1599717 NA other downstream 603149 19555597 ~ 19557357 (-)
G1602753 NA other upstream 2240376 22403516 ~ 22403837 (-)
G1602763 NA other upstream 2252278 22415418 ~ 22416043 (-)
LOC110497482 LOC106610017 other upstream 2978676 23121508 ~ 23168994 (-)
G1604902 NA other upstream 3810650 23973790 ~ 23974106 (-)
gpr137c LOC106602981 other upstream 4027558 24176332 ~ 24206622 (-)

Expression


Co-expression Network