G1601848 (LOC106610028)


Basic Information

Item Value
gene id G1601848
gene name LOC106610028
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 21763166 ~ 21784919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1833927
CCGTGTTCGAGATATTTTCTTATTCAGGTGTATAGCCAGTGAGAACAGACATTTTGATGGAATACTTGGTTACAGTAGGAGAGTGTAGTAGTAGAAAGACAACACAGGAACCAGATCACCTCGTTTACCTTGGcattcctcctctgttgtcaaaCTAAACACATCAGAAGCTACCATAACAGATGACAATAACTGTCCTCTAAAAGACAAGGTATCACATATTTAAAAGACATCAAGATATACTGATATATTTACACTCTTTGTGTAATGGTATGAATTCATAGCTTAAATCAAAAACATCTTAAAAACACTgcgtagtgagtgtgtatattagTAGGGGCTTCGGTCgggaagatggggggggGGTAATTGGCAGCGTTCTCCTCGGCGTTGCCTCCGATCTCTCCGATCAAGATGATGCCCTCCGTCTTAGGGTCCTGCAGGAATACCTCCAGGCAGTCAATGAAGTCTGTCCCATTGAAGGGGTCCCCGCCAATGCCGATGCAGAGAGACTGTCCCAGGCCAACTTGTGAAGTCTGGTGAACAGCTTCATATGTGAGAGTTCCCGATCTTGAGACAATGCCAATCCTCCCTTTCTTGTGAATGTGGCCCGGCATGATCCCGATCTTGCATTCTCCCGGATTAATAACGCCGGGGCAGTTGGGGCCGATGAGGCGCGTGGTGCTCTGGCGCAACAGCTTGTGTTTGACCTTGACCATGTCCTGCTGGGGGATGCCCTCTGTGATGCACACCACCAGGGGCATGCCAGCGTCGATGGCCTCCATGATGGCGGCACCCGCGAATGGAGGGGGCACGTAGATCACTGTGGCCTCGGCCCCGGTACCCTCTCTCGCCTGGAGGTGTGGGACATGGTGAATTTAGGGCTTGCTATTCATC
>TU1833928
CCGTGTTCGAGATATTTTCTTATTCAGGTGTATAGCCAGTGAGAACAGACATTTTGATGGAATACTTGGTTACAGTAGGAGAGTGTAGTAGTAGAAAGACAACACAGGAACCAGATCACCTCGTTTACCTTGGcattcctcctctgttgtcaaaCTAAACACATCAGAAGCTACCATAACAGATGACAATAACTGTCCTCTAAAAGACAAGGTATCACATATTTAAAAGACATCAAGATATACTGATATATTTACACTCTTTGTGTAATGGTATGAATTCATAGCTTAAATCAAAAACATCTTAAAAACACTgcgtagtgagtgtgtatattagTAGGGGCTTCGGTCgggaagatggggggggGGTAATTGGCAGCGTTCTCCTCGGCGTTGCCTCCGATCTCTCCGATCAAGATGATGCCCTCCGTCTTAGGGTCCTGCAGGAATACCTCCAGGCAGTCAATGAAGTCTGTCCCATTGAAGGGGTCCCCGCCAATGCCTGAACAAAAACCATTAGAAATCACTGTTACGCTGCTTATATCCAGAAGATGAATGTCAGACGTGACCGAAGGCATAGAGTACCATGTACTCATCATTTTTTAGGTTGAATTGGTTTTATATGTGACTTGGGA
>TU1833929
CCGTGTTCGAGATATTTTCTTATTCAGGTGTATAGCCAGTGAGAACAGACATTTTGATGGAATACTTGGTTACAGTAGGAGAGTGTAGTAGTAGAAAGACAACACAGGAACCAGATCACCTCGTTTACCTTGGcattcctcctctgttgtcaaaCTAAACACATCAGAAGCTACCATAACAGATGACAATAACTGTCCTCTAAAAGACAAGGTATCACATATTTAAAAGACATCAAGATATACTGATATATTTACACTCTTTGTGTAATGGTATGAATTCATAGCTTAAATCAAAAACATCTTAAAAACACTgcgtagtgagtgtgtatattagTAGGGGCTTCGGTCgggaagatggggggggggggggtgcctttCCCCGTTTACAACATCTTCCTCTTCTCAAACTCCTTGAACATGGTGCTGCCCAGTTGAGCCGGGGACATGCTGACCACAACGCCCGCCTGCTGTAGGGCGGCAATCTTCTCTTTGGCTCCACCCTTGCCCCCTGCGATGATGGCACCAGCGTGACCCATCCTACGGCCCGGCGGGGCAGTGAGCCCGGCGATGAAAGACACCACGGGCTTGGCATTTgttccctgggggggggggggggggggggggttgagaaggAGACAGCCTCAGTCATACTTGTGTTCTCAGACAAATAACAGAATAGACATTCCAAAACAAAAGACATTGACTTCCTATTAACAGACCCTCAAATAGGTATTCCTAGAACAATCTTATTTTATTATTAAaataaaagtacagtaaatgttatATTCACATTCATGCCAATACTCTATTACGTGCTCTGTCCAGATGTGTGAGAAAGAGTCAATGAGACCATTTAATTGCATGGGCAGATACACACCCTCCACACCCCTCCCTGCCATTTCACATGATCTCATTCTCGCAGAAGCAGGTTATTAGTCACGCGGACACTGATTAGCTCTGGCCCTGTCCGCTCAGCTCGTCCTGATGGAGGCTAAATTCAACAGTTGAGATAGTCTTCCAGCGCTTGGCGGGAGGGGAGAGCGAGCTAATATTTCACACTCAGGAATAACATCGTATAGGAGATGAAAGACAAGCTTGCTCATTAGGGCATGCTTAGGAAAACTTTTCGAATTGGGTAGCGAAAATGTGCGTTTCCTATTCGACCAGGTACTGTAGTAGCCACCCATTTCAGTATTTTTTTTGCCAAATGAACACAAGCCAGGCCTCTCTTCAGACACTCCTCAGGTACTTGCCTTGTGATAAGGCTCtccttccatctttctctccctcatacCCTCTCCTTCAGATGAGAGTTAACACTGCGTGTAGAACAAACTGGCCCTCCTGCTTAAGTCTTTACTTCCCTGCTACCATGTCAGCGCATGctttctaaatggaaccctactGAAACTGGCAGGCATGTACAGCAAGACCACTGCCCGACGACCGCTATTCATTTCAACATGCTTGAAGACACTGCATAATTGTTTAAGCGGAGCAGCCAATCCGCTCGTCTCTCGGGCCAAGAaaatgaatttgtaaaaaaaaatggttttaaaAACCTGACTAACAATGTACAGTATTAACAAGAGATGGCTCTGAAAGCAAACTGTTCACTAAACGGGGGAATATGACTGCAAtcaaggggggaaaaaaaggtaCCGGGAGTATACTAATCGAGGTGAATGTTTCCTCTTGTAAGGTGGCCCAACATTTTTTCCTCTAAATGGGTCAGAACGAGGGTGGCCATGCCTTTTCCTAAAGACTGACCTTcctgcaggcttttgttccacacctgattctactacttaGCTGCTTTTCAAGACCTTGACTAGCTGAAGTACGGCTGTAGCAAAAGCCTGAACACCCAGTAGCTTTCCAGGAGGAGGGGTGGCCACGTCTGTTTTAGAATCTCTATTCACAAAGCATCCCTGTCCATACAATCTTATTAATTATGGTCaacaaggcaaaactgatcctgaatcagcactcctacttacTCAGACACTTTATGAATGCAGGCCCAATGCTGTTCTTCTAGCTAGGCCCTTAAAAATTCCAGTTCAGGCTCTCGCTTGTCCCATCCTAATGAATTCACAGCTTTGACAAACAAACCACCCCCTGTGTGAATCAACTTTTAAAACCTACCTGAACAAGTTAGGCTGTAATTAGTCAATTAATCTTCATCTTCCCTCAGAGAAGTCGGAGCATAATAAGAGAAGTCGAAATAGCATTTGAAagttactttaataatggaactaaAGAGAAGGAGTAGGTCGTTTCCCTACCTCTTCTTCAGTTTGTTCCACCACAGGAGTAGGGGTGGGGAGGCAGGGGTTGTTTCAAAATGGGCCTTGCTGTATGCTCGGGGGTAGAGCCTCAATCTTGTCAGATTAAGACGACAAACAGACAATTACAAATTGATGAGGCCCCCTATTCGCACACTAGATGTGAATGGAGTGCGCTACACACGCCCCACCGCTTTCTAAAAATCACTCACCTGCCCTCCTAGACGACAATCGGTGTGTGTTAGTGAATGCATTGTGCTTGGGCTTTGCATTGTGCGTAAAGcacctaggagagagagagagcgagcagtgGCTAAGAGTCGAGGATGACAGGAAAAAGGATACATTTAGTGTTCACGTGGGTTAGCTGCCAAATACTCTCTCGTTGGAAAGCATGGGCCCAAAGGTGTTCCGTCTTAGGTAGCTCTTTAGTTTTACAAATGCATGGAGGCTGAAGAATACTAGGTGGGATTTAGACGTAGAAGTCTCAAAAAGAAAAGCGCTTAAGACCTTCTGAAAAGGTgacttacactgaacaaaaatataaaaacgcaacaaaCAACAATTccagattttacagagttacagttcatatataaGGAAATTGAAAttaattaggccataatctatggatttcacatgactgggaaaacagatctgcatcggttggtcacagatgcctcatgcagtgcaacacatttcctttgcatagagttgatcaggctgttacacgtcgatccagagcatcccaaacgtgctcaacgggtaacatgtctagtgagtatgcaggccatggaagaaatgGGAAATTTTCAGCTACCAGAAAttgatccttgtgacatggggctgtgcattatgctgaaacatgaggtgatggcggcagatgaatggcacaacaatgggcctcaggatctcatcacggtatctctgtgcattcaaattaccatcaaaatgcaattgtgttcgttacccgtagtttatgcctgcccataccataaccccaccatggtgcactctgttcacaacgttgacatcagcaaaccgcttgcccacacgacaccattttcccagtacagttgaaaacgGGATTCATCTCCAGCAGTTTGTGCAGACATTCTTTGGTTGTTCAAACCCATCAGCTGTccggtctcagacgatcctgcaggtgaagaagccggatgtggaggtctggagtggttccacgtggtctgcggttgtgtggccggttggacgtactgccaaattctctaaaacaacattggaggcagcttatggtagaaaaattaacattcaattctctggcaacagctatggtggacattcgtgcagtcagcatgccaacatTCGTGCAGTCTGCACACTCCATCAAAAATTGAGACATCTGActcccgggctgtgttgcagccggccgaGACCGGGagacgacgcacaattggcccaccgtcgtccgggttaggtgtGGGTTTGGcaggcagggatgtccttgtcccatcgcacactaGTGAATACTGTGGCGGACCGGGGgcaatgcatgctgacacggtcaccaggtgtacggtgtttcctccgacacattggtgaggctggcttctgtgttaagcgagcagtgtgtcaagaaggagtgcggcttggcagggtcgtgtttgaggacacatggctcttgaccgtcgcctctcccaagtccgcacgggagttacagcgatggaacaagactaactaccaattggatatcacgaaattggagagaaaaagaggttaAAAAAAACTTCTTACaacattgtgttgtttgacaaaacaaaacattttagagtggccttttattgtcgctagcacaaggtgcacctgtgtaataatcattctattTAATAAgagtcttgatatgccacacctgtcaggtggatggattatcctgGGAAAGGATAAGcactcaccaacagggatgtaaacaaatgtgtgcaaaaaaataaagaaatcagctcatgaaacatgggaccaaaacttaACATGTTgactttatatttttattcagtatactAAAACAGACCAGGTTGGCAAGCAGCACACAGAGTTAGAGGAGTAGTTTTTCTATGTAGGCTAATGACCTATAAAGTGTGCACTAATTTTAGCTCTGCGAAATTATTTCTTGCGCTGTTGGTTGTAGGTGCACTTCATTCAGAAGCCTTATGCATCGGGTAGGCAAAGTGTTCCTATTTTTAACTCTATTCAATACCATTACAAAACATAAAACGCacttctccctacttccactcgcgctgcaatgaatgagtagccaagtCTATCAATAGCCCTACATTTTTATTAGCAGCTCATCTCGTCTGTTTTAATAGAGGAAtattttcactttctctggtcataggaacaacatgaatttgtgcatgaggcagatgaTGCATTGCGACTTGAGTTTCACCATCAGGTGGAAGCTGGTGTCCCCTCTCTGATTAGTCTCAcccggaggaaaggaaggagagagcggaGACCTTGAGAGGAGGACACTCCGCTgatttctccctccctcagctGAGACTAATactgtgttcaaaacaactgggaaatcGGAAATCTCAGACATCCGTGCTTTCAAAAtggttttgaacagtcatccaactcagagctctagaaagatgcctgcATTCTGACTTTTCAGAATCACGGACGTCATGACttgaccgcc

Function

NR:

description
histone-lysine N-methyltransferase SETMAR-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1833927 False 897 lncRNA 0.50 5 21763166 21784919
TU1833928 False 632 lncRNA 0.42 2 21763166 21782173
TU1833929 True 4983 TUCP 0.45 2 21763166 21776752

Neighbor

gene id symbol gene type direction distance location
LOC110497517 ctnna2 coding upstream 431222 20668895 ~ 21333923 (+)
LOC110498561 LOC103369849 coding upstream 1359766 20400331 ~ 20403400 (+)
LOC110498677 LOC106609979 coding upstream 1400386 20335232 ~ 20362780 (+)
LOC110498678 LOC106609977 coding upstream 1569659 20079713 ~ 20193507 (+)
LOC110497519 LOC106609975 coding upstream 1703105 20055332 ~ 20060061 (+)
LOC110497513 cisd2 coding downstream 8125 21793044 ~ 21797937 (+)
LOC110497510 LOC106610025 coding downstream 208124 21993043 ~ 21996218 (+)
LOC110497507 NA coding downstream 306572 22091491 ~ 22095427 (+)
LOC110497505 dnja1 coding downstream 407407 22192326 ~ 22215865 (+)
LOC110497504 LOC106602713 coding downstream 444497 22229416 ~ 22265522 (+)
G1601547 NA non-coding upstream 228948 21534014 ~ 21534218 (+)
G1601543 NA non-coding upstream 235885 21527053 ~ 21527281 (+)
G1601532 NA non-coding upstream 257638 21505327 ~ 21505528 (+)
G1601531 NA non-coding upstream 258122 21504724 ~ 21505044 (+)
G1601526 NA non-coding upstream 265168 21493298 ~ 21497998 (+)
G1601869 NA non-coding downstream 4895 21789814 ~ 21818695 (+)
G1601918 NA non-coding downstream 87991 21872910 ~ 21873125 (+)
G1601928 NA non-coding downstream 107027 21891946 ~ 21893298 (+)
G1601930 NA non-coding downstream 113678 21898597 ~ 21898798 (+)
G1601937 NA non-coding downstream 124604 21909523 ~ 21909841 (+)
G1600522 NA other upstream 1120650 20642082 ~ 20642516 (+)
G1600174 adra1b other upstream 1342511 20418646 ~ 20420655 (+)
G1600167 NA other upstream 1351855 20411033 ~ 20411311 (+)
G1600166 NA other upstream 1352267 20410673 ~ 20410899 (+)
LOC110497521 LOC106602766 other upstream 1716404 20039547 ~ 20046898 (+)
G1601872 LOC106610027 other downstream 18274 21803193 ~ 21803890 (+)
G1602007 LOC106610024 other downstream 234148 22019067 ~ 22020999 (+)
G1602216 NA other downstream 632283 22417202 ~ 22417549 (+)
LOC110497498 LOC106610000 other downstream 663898 22423424 ~ 22462109 (+)
G1605451 sptlc2 other downstream 3066256 24851175 ~ 24853937 (+)
G1601864 NA non-coding downstream 129 21776881 ~ 21777210 (+)
G1601850 NA non-coding downstream 1088 21777840 ~ 21778860 (+)

Expression


Co-expression Network