G1602626


Basic Information

Item Value
gene id G1602626
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22210552 ~ 22215865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1834817
TTGAGGCCTATTGAAAGTTTATTTACAGTTTGACTAATTCCCATGACGAGTGGTAGAATTAAACAGATTAGACAACTCTAGATCGCACAAATGGGGTAAATAACTTTTTCCATCGTCAGTTGAACATAAACAAGTATGCCATACTACAGAAGATAGGATGATTCAGATGAAGAACCACAATGCCAATGTGCATTTTATGAAATGGAGATAAACAtgcatcattacatcattattaaaaatgaataaaaactaAATAGTGTAATATTTGGCAagtatctttcaactatgctaatgtggaatacaaaaacatttcattattctaaaatggaccaATATGCACAAAGGCCTATATGGTTCTTCACTGCGAGGATTAAATTAGGCAACATGAATTATAGCTTCCAACTATCTTATTTTGTGACCTTTGGAAGCAAAAAAAAGTTAAGACAGCGGGTGTTCAAAACCTGCTAATATACAAACACTTTTAAAAAAAGTCAGTGACAGCATCCATAGCGCTTCCAAAATCTCAATCTAAGGAATTTAACCAGAAATTTATTTCATCCACTCAGGCACACGATCCAACTAAAAGGCAGCCAAGTCGCATTGGAACGTAGATCCAGGTATCAGGCCCAAAGGACCACTTCAGCACCACAGTTAGCATTGTAAGTTAAGAGAATAAAAAATTAAAGATGCAGATTGTGCACGTTTCCGGAGGGGTCTGGGGTTAGAGGTTGGAGTGAGGTGAGGGGGTCTTATGAGGTCTGGCACTGGACCCCACCAGCAGACGGGTAGTCATCCTCCACCATGTAGTGGTATTGACTGCGTCTTACTCTGGCCGGGTCGCAGTCTTCCAGGTCGGCGTAGATGTAGAGGTCGTCGTCCATACTCTCGGGCTGCTCCGCCTCACTCTTGGCAGGAAGGTAGTGCTCTAGCTCCTTCAGCTTGTGCTTGGGGCGTCCCTTTTCAAACGGCCGGCGGTGTATGGGCATCCCCTCATTCAGGACACACTTCTTGTCGCCAGGTTTGATCAATTCCCCTGCAAAGGTAAAAATTAGATTAGTTTCTAAAATAAAAACATCAACTGGTGCGGTCACAATACCAACATTTTACTAAACCGAGTAGTATAGCGATACCATTGGGGAAATTATGTGCTACCCAAAAACCCTGTCACTGATATTCACACTTCTAATCAATACAACACATAAGGAATGAACTTCACACTGTTCACTGCATAATAGAATGCTGCGTAGAATGTCTGATTATCTCATATTTGCAAAGGCTTACATCTAATCTGGCTGGAGCAATGGGACGAAggaatatactgtacatgcataATGATGTGCATGTCAAATAAAATCTAATAttatgcagttcaagaaatagagtttaacatttttttactaaataaaacagaaaataaataaacaataaaatgacatatcaataacgaggctatatacagggggtaccggttctgagtcaatgtgcagaggtacaggttagtcgcGGTAGTTTGTACATGTGGGTAGGGGTAAAGtgcctatgcatagataataaacagtgagtagcagtagtgtaaaaacaAGGGGTGGCCAATGTAAATGATCCAGGTTAATTGTTTAATTGTTCAGCAATCTTATAGTTTGGGGGTAtaagcttgccatgcggtagcagagagaacagtctgacttgggtAACTGGAGTCTTTGATAATTCTTTGGGCATTACTCTGACCCCGCCtcgtatataggtcctggatggcaggaagcttgtccccagtgatgtattggtctgtacgcactaccctctgtagcgccttacggacgccgagcagttgccataccaggcggggaTGAAACTGGTCATGGCGcaagctgtagaactttgaggacctggcgactcatgccaaatcttttcagtcccctgagggggaaaaggccctcttcacgactgtcttggtgagtttggaccatgatagtctgttggtgatgtgaacaccaaggaacttgaaaccctCAACCCACTCCACTCCAGCCCTGTCGAATTTAAAgaggggcctgtttggccctccttttcctgaagtccatgatcatctcctttgtcttgctcacattgagggatatgttggcctaccactgttgtgtcgtcagcaaacttaatggtgttggatgcttggccatgcagtcgtgggtgaacagggagtacaggaggggactaagcacacacccgaggggcccccgtgttgaggatcagtgcggcagatgtgtttttgcctaccctcaccacttgggggcgAAATTGTGTTATGATAAACTGTAAGCTCTCCTCTTCAggagacctctgtgtgtgtgtgtgtgtgtgttaaaacctGTTTTGAGTGTTGTGCCCTTCAGACACTATCAGAAGACAGAAACCGTCTACAGTACGTTCATACTCCTCCTATCTGGGCCCCACCTGGCTATCTGAGGTTCTGAGAATaggactggttttctgagaacacaAGGCTACCGCAGGCCTGATGAAAACAGCCACCTGTCGGAAGATGCTTGGACTCGTTCATCTTGTTATGACTCTATACTTGTGATGAAAGGTCAAGTTTTGGCAAACCCACTTCTGAGCTTTTAATTGCTGATGTCAGGGGAAGGTTAGATTTATTCAAATGTTGTTACCAGGGAAACTCAAAATTGTGAGTGGAAGAACATACTCTTTGGGGACCAACCAGGTCAACCTGCGCTAAGGTAATTAACCGCTTGTT

Function

NR:

description
dnaJ homolog subfamily A member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1834817 True 2752 lncRNA 0.44 2 22210552 22215865

Neighbor

gene id symbol gene type direction distance location
LOC110498675 LOC106610021 coding downstream 23765 22155880 ~ 22186787 (-)
LOC110497506 mnd1 coding downstream 54730 22122397 ~ 22169711 (-)
LOC110497508 LOC106610024 coding downstream 89541 22008323 ~ 22121011 (-)
LOC110498676 NA coding downstream 209198 21999248 ~ 22001354 (-)
LOC110497511 tacr3 coding downstream 275906 21894972 ~ 21934646 (-)
LOC100135859 LOC106602804 coding upstream 5983 22221848 ~ 22225274 (-)
LOC110497500 LOC106609998 coding upstream 115212 22331077 ~ 22358393 (-)
LOC110497496 LOC106602722 coding upstream 271847 22487712 ~ 22497823 (-)
LOC110497495 LOC106610003 coding upstream 306127 22521992 ~ 22587011 (-)
LOC110497491 LOC106610007 coding upstream 472451 22688316 ~ 22694024 (-)
G1602655 NA non-coding downstream 18414 22191926 ~ 22192138 (-)
G1602559 NA non-coding downstream 202906 22007293 ~ 22007646 (-)
G1602556 NA non-coding downstream 205545 22004554 ~ 22005007 (-)
G1602504 NA non-coding downstream 278568 21931783 ~ 21931984 (-)
G1602656 NA non-coding upstream 2366 22218231 ~ 22218839 (-)
G1602671 LOC105030945 non-coding upstream 27767 22243632 ~ 22247511 (-)
G1602687 NA non-coding upstream 50537 22266402 ~ 22266823 (-)
G1602693 NA non-coding upstream 63397 22279262 ~ 22279604 (-)
G1602700 NA non-coding upstream 73516 22289381 ~ 22293391 (-)
G1600030 NA other downstream 2073991 20127211 ~ 20136561 (-)
G1600014 LOC106609977 other downstream 2101761 20107915 ~ 20108791 (-)
G1599758 LOC106609957 other downstream 2568549 19638760 ~ 19642003 (-)
G1599760 LOC106609957 other downstream 2573525 19636018 ~ 19637027 (-)
G1599717 NA other downstream 2653195 19555597 ~ 19557357 (-)
G1602753 NA other upstream 187651 22403516 ~ 22403837 (-)
G1602763 NA other upstream 199553 22415418 ~ 22416043 (-)
LOC110497482 LOC106610017 other upstream 925951 23121508 ~ 23168994 (-)
G1604902 NA other upstream 1757925 23973790 ~ 23974106 (-)
gpr137c LOC106602981 other upstream 1974833 24176332 ~ 24206622 (-)

Expression


Co-expression Network