G1603079 (LOC106602736)


Basic Information

Item Value
gene id G1603079
gene name LOC106602736
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 22940110 ~ 22944324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1835327
GGGAGATATTTAATAGCAAGATTGTGCTACGAAACGTGCAATATACAATGGAACACATAAAAGAGGAACAATAAACGTAACAAAGGACAGAAAAGGTCAAGTCAGCAATCTGATTGGAAATTACAAAAGGATTATTTGTAACATATATATCAATTAACCTGAacataaaacatgttttattaagTGTTAAAATGAATATGTTGATAAAAACCACTAAGTGACTGGCCATAATTGACAATAAAATACAAAATTCCACATTGTCAACAACACAAAGATGTAGTGGGGGCTTTACAAACACAATTAGGAAAAGCTTTGAGCTGTATCACACTATTAAATATAGTTTGGAATGAGACTGAAGGAATTGTAAGAGGTCTGCATCCAAATATAGTgcctattattgttattattatatctCTTCTAATCATAGTCATCACAAAAGTATGAACAAACCCCCCTGTTTATATGTTAGGCATACATTTTGACTAGCATCCAACCTACCCACACTGTTTAACATTTCCTATGGGTATGAACATTACTGTTGCAATAATGATAATGGTGGTGTCATGTGGTCATGACACCACTGGTGAATACAGGCTACCCTAAACATAAATTAATTTACACAAAAAAAAGGCGAGGCAAGGCACCATAGACAAACTAGAAATGTTTCCTCTTTTCAGCTGCACACACAACTGATCACAATTTCCTGAGAATACTCAACACGACGTATCCCTAGTGGGACCAAAACTTCAGCCAAGGATGGGACTTTTTTGTTGAATTCTTCCTCTTATGCCTAATGGGTATAGAACTTTCCCGTGCTAGTATCTGTATCTTCACTAATGATCTAGCGCTGCAGACAACAATATAGCAGCTACCCTGACTTTCTAAACTGTGTATCAATAGATAGCAAAATTAGCTAACTAGCTTCATTGGCAAACACTACATTGGTATTAGcagtagctaacattagcttcATTCACAGCTTCATTAACAACACCTACAATAGTCTCTCATTCTCAATAGTTTCTCATTCTGAAACACTCATGTACAGCTAGTCTCTAATTTCATTGTTTTACAAGCTATGAAGCAAACAGATAGCATTATGAAGTTGAAGTGGGGCGTTAACTCAAGCAAAAGAGGTAGATCGAGGCAGGGTGGCAGAGTGGCCAATTAATGATAACAACCATACGCAGTGATACCTACTGACATATTTTATCTGTATATAAGCACTGGTATAACACAGGTTGTTGGTCTGGAAAATGACTTCCATAAGACAAAGACAGAGGCATTTGTTTTCTCATGTTAATTTACTATACATCTAAATGTTCTGCAATTTGTAAAAAAATGTGTAAAGAGAGAGGAACataatgagagaggagagaggaacataATGAAAATGCATTCATTGGTTTCCCTTGTTGACCTGTCATGCATAATGTGTATTCTTTAAATATAGAATTTATTGTTTAGTTTTATTGTTCTAAGTTGTCATGTAAAATGTTTTGTGATAGGTTGACAGTTTGACACCGCAACAATGCAGAGATATTACCAAAAATAAGTATATTATTTGAAATACTTGGCAGGACACATCTAATTtaatttaaaccattttaaataAATGGTGCTTTAGAAATGGTAAGAAATAGTGTATAATCTCTGCATCTTCTGCAACATCAAAATGGGGCAGTGGGTTGGGACTAATGTTGCAGAATGACATGCCTCCACTGTTTGGTTGTTACCGCTTGCTTTTTGGCAGAAAATGTAGGCCGAGGAGCCATTTGAATGGTACCTCTAGAGAGGACATCAGCATCAAAGGGTATAGAAGACATAGATTCTGAGTTGACACTGAGAGATAGCGGATGGGGAGTGCTTGTGGGTATAGGGCAGTGGGTGCTTGGAGCTTGGGTAGCTTTTTTGGGGATATCATGCAGAGCAGGTGAAGCATTATGCTTCCAGTACAGTTGCTTGCTAAATGGGAGTGGTTCACTTGACTGTGTAGATTGACAGCCGAAAGGGTATAGGACACTCACCGATCTAGTAGACTTAGCAGGAGCTATGGGCTTGCATGGTTGGTTTGCTGGGGGAAGATCATGGGCAGGGTAAAGAGAAATGCCAAAGGCAGGTCTAGGGCTGACAACAGGGGCAGGTTTAGGGCTCAATGGTGGGTTTGACTCAGGGGTTGGGATGGGAGCCATTTTGAGGCTAGGGCTAAGGCCTTCAGCCTCAGTGCCTACGTTATATCTAAAGAGTGAAGAGTCCAGCTGGTAAGGCTGATGTTTCAAGACGTCTAGGGCATCCATGTGCTTGTGGGGTGGTGGTTTTGTTTTCGCCTTGGTCTTTGGCTTGATTTTTGGACTTGTTGAAGGTGGCTGCTTAGCTCCTGCAGGGGGATAGCAAGGAGCATGACGGGGATTGTATGACAAAGGAGATGGGGCTCGAACGTTCGATGAGTATCTCCAAGCACCTGGAAGGGAGGTGGTGGGGGAAGGAGACTTTGCTTTGTTGGCCTGAACTGTTTCGGCGTCCACCACATATTTCTCCATACGGGTCTTCCTCGTGGCAAAGAGTTCGGCACCTCTTCCCCTCAGAGTTGGACCATTTATGGCTGGACTAACATGGCCCTCAGAGATGTGACCCATTGGAGATGTAGACGGTGCCTTGGCTGCGTGGCTGTAAGTGATCTCTTGTTGAGGTGGGCAAGATTCCACCGAAGGATTTGGGGACTTATTCTTTGAGACTGTGAGTTGGCGAGGTGCCGTGTGATTTGGGTTTGGGGCCTGAAACCTCACTGGGGACCGCGATGGTTGTGGACTCCAGCTATTCATGGTTGGCTGAAGTTGAGAGGGTGATGTTGAGTTGGCTGGTGCCCCGGTGCTCATTGGTGGCTGCGGTCGTGCCTGAGTTTGGGGTGGTTCACGGGGGTTCACCATTTGCTGAGGCAAAAGCCAGTCTTGTTGTTTGAAGTATTGCTGAGGAGGAGCCCCCACTGGACTTGGGAAAGATGCTGGGATTGGACCCGGGTGAAGTAGCACATTTGAAGAACTCTCCTTCAGCCATGGTGGACAGGCTGGGTTGATGCTAGGCTTTGGTGCAACAGGTGGGGGATACTTGTGCTTGACTTTTCGGGGTTGCATAAAGTTGCATGCCTCAGCACCAAGACTAAAGTAGTCTTCCTCTTCTCCTGACTCAATGTATGATCTTCTTTCCCCTCTGTTTTGAATATAGGCATTGGATGCTTGATCAGAGGATGCTCTATTAGCACCTCTTCTTTTTGAGTCTAGTAGGATGCCAGTCTTGATTGCTGGTACAGATATGCGTTCATCACGCGACGCTATGAAGTCCCCAGTTGGGGACCAGACCTGTGGAACTGTGTGTGTAGGGACTGATACCTTGAATTTGAGTTCATGATGCTTCACTGGACTAGTGACACCACTAAGAGGAGAGAATGGGATAGGCACTCTGTTTTGGGATCCCAGGAAGGGCTTCGCTGTTCTGTTGGGCACAAGAGGCTTTGGTATGGCACTAGATAGGTGGTTGGGCATTCTGTTCATCATGTGAGTACATTGTTGCACCTCCTGTTGGTTTTCTTTGCACTGCAGTTGTTGATTGCCATGAGCATGATTGGATTGCACGTAAGTTTCATCCATTTTGTAAGACTTGTGCAGTTCTGTGTCTTCAAGCTCTACAATACCTTCGCCTGGTAAGCCTTTGCACCTCATTTCCTCGTGCTCTAAGGCAATCTCATCCATCCTCTGGCGGCGCTGCGCAAACATTGCCACGCCCTTGCCTCTTGTCTCTGGCAGTCGCTCCATCTCTTCCAGGTGCTGAAATATGTTGGCTATTCCAAGGTTCTCCTAGTTTAAATTGACGTCTCGTTCTTGTACAGTCATTGAGTAGTCTTCTTCAAGTTCTGAATAATCTTTAGTGGTCAAAGTAAACCTGACCGTTTTGCCGTCTTCACTTTCTATGTCTTCGCCGTTTTTGTCGTCAAACTGGTGCTGACCTGTCCTGTAGCTGACAAGTGTATAATTCTTAACCCTTTGCCGCTGCTTCTTGAACATCAACACCCCTCTGTTTCTGGGATTTGGTGCATCGGTCAACAGCAAAGCAATGCTTTTACATTTAGAATTGGCTTCATTCACCTGCTTGTCTGACTGGCTCTTGCTCTGTCTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1835327 True 4171 lncRNA 0.43 2 22940110 22944324

Neighbor

gene id symbol gene type direction distance location
LOC110497488 LOC106602733 coding upstream 98838 22839013 ~ 22841272 (+)
LOC110497489 LOC106610009 coding upstream 109559 22779445 ~ 22830551 (+)
LOC110497490 LOC106610008 coding upstream 166998 22758533 ~ 22773112 (+)
trnar-ucu-8 NA coding upstream 235315 22704704 ~ 22704795 (+)
LOC110497493 LOC100194655 coding upstream 253680 22683830 ~ 22686430 (+)
LOC110497483 LOC106610016 coding downstream 159825 23104149 ~ 23116038 (+)
LOC110497481 LOC106610019 coding downstream 230192 23174516 ~ 23221212 (+)
LOC110498672 LOC106610020 coding downstream 322988 23267312 ~ 23307598 (+)
LOC110497479 LOC106602886 coding downstream 815198 23759522 ~ 23804586 (+)
LOC110498687 socs4 coding downstream 1034055 23978379 ~ 23979684 (+)
G1602934 NA non-coding upstream 152638 22774763 ~ 22787472 (+)
G1602306 NA non-coding upstream 360477 22579392 ~ 22579633 (+)
G1602297 NA non-coding upstream 374043 22563093 ~ 22566067 (+)
G1602277 NA non-coding upstream 413267 22524095 ~ 22526843 (+)
G1602275 NA non-coding upstream 416253 22521999 ~ 22523857 (+)
G1603125 NA non-coding downstream 65807 23010131 ~ 23010757 (+)
G1603360 NA non-coding downstream 80441 23024765 ~ 23024980 (+)
G1603385 NA non-coding downstream 117124 23061448 ~ 23066827 (+)
G1603490 NA non-coding downstream 278041 23222365 ~ 23222623 (+)
LOC110497498 LOC106610000 other upstream 478488 22423424 ~ 22462109 (+)
G1602216 NA other upstream 522561 22417202 ~ 22417549 (+)
G1602007 LOC106610024 other upstream 919111 22019067 ~ 22020999 (+)
G1601872 LOC106610027 other upstream 1136220 21803193 ~ 21803890 (+)
G1601848 LOC106610028 other upstream 1163358 21763166 ~ 21784919 (+)
G1605451 sptlc2 other downstream 1906851 24851175 ~ 24853937 (+)
G1606716 NA other downstream 2880160 25824484 ~ 25824826 (+)
LOC118941466 NA other downstream 3029021 25973345 ~ 26002713 (+)
LOC110497557 gcfc2 other downstream 3319965 26261361 ~ 26279307 (+)
G1607702 NA other downstream 4575639 27519963 ~ 27522078 (+)

Expression


Co-expression Network