XLOC_035351 (ccl27a)


Basic Information

Item Value
gene id XLOC_035351
gene name ccl27a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 1170015 ~ 1183948 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069423
AATCATTCTCAGAAAGCCACGATGGAGTTCAGATCATCATGTCTCCTTCTGCTCGTCTGCTTTACCATCATCATCCTCACCGACAACAaagGTGCAGCCATTCCAACATGCTGTCTGAGTGTTTTACGCAGAATCCCTAAACGTGTACTGCGATCGGTCAGAACATATGAGGTCCAGGACACATCTGGACACTGTGAGATTAAGGCTctaatATTACACTTCAAGGGGAAGAAAATCTGTGCTCATCCCAAACTGGAGAGATTCTTGAAGAAAATGCTGAAGCACAAACCTAAAAAGCCTTAAAGGAAAGAGCTTCAGGCTGAAATCACGGATACAGACGGCTTCAGGACTCTTCATCTACATTTTATGtctttaaatctgtttatttttatataaaagtaatcaTGTAATGTTTCCAGCTGATGCTTCAGACAGTGTGTGTGGCGATATACTGTGTGTGTTACGCTCTAATATCAACTAATAAACACTTGTTTCAGTTT
>TCONS_00069424
AATCATTCTCAGAAAGCCACGATGGAGTTCAGATCATCATGTCTCCTTCTGCTCGTCTGCTTTACCATCATCATCCTCACCGACAACAaagcaGGTGCAGCCATTCCAACATGCTGTCTGAGTGTTTTACGCAGAATCCCTAAACGTGTACTGCGATCGGTCAGAACATATGAGGTCCAGGACACATCTGGACACTGTGAGATTAAGGCTctaatATTACACTTCAAGGGGAAGAAAATCTGTGCTCATCCCAAACTGGAGAGATTCTTGAAGAAAATGCTGAAGCACAAACCTAAAAAGCCTTAAAGGAAAGAGCTTCAGGCTGAAATCACGGATACAGACGGCTTCAGGACTCTTCATCTACATTTTATGtctttaaatctgtttatttttatataaaagtaatcaTGTAATGTTTCCAGCTGATGCTTCAGACAGTGTGTGTGGCGATATACTGTGTGTGTTACGCTCTAATATCAACTAATAAACACTTGTTTCAGTTTTG

Function

symbol description
ccl27a Predicted to enable chemokine activity. Predicted to act upstream of or within chemotaxis and immune response. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Orthologous to several human genes including CCL27 (C-C motif chemokine ligand 27).

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005125 cytokine activity molecular_function
GO:0008009 chemokine activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000208-28 Predicted to enable chemokine activity. Predicted to act upstream of or within chemotaxis and immune response. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Orthologous to several human genes including CCL27 (C-C motif chemokine ligand 27).

Ensembl:

ensembl_id ENSDARG00000058570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069423 False 500 mRNA 0.41 3 1170015 1183946
TCONS_00069424 True 505 mRNA 0.41 3 1170015 1183948

Neighbor

gene id symbol gene type direction distance location
XLOC_035350 NA coding upstream 6774 1158751 ~ 1163241 (+)
XLOC_035349 avp coding upstream 12635 1148876 ~ 1157380 (+)
XLOC_035348 ubox5 coding upstream 36070 1118328 ~ 1133945 (+)
XLOC_035347 lzts3b coding upstream 59663 1082100 ~ 1110352 (+)
XLOC_035346 sprb coding upstream 99379 1065458 ~ 1070636 (+)
XLOC_035352 slc35d2 coding downstream 3980 1187928 ~ 1206960 (+)
XLOC_035353 NA coding downstream 26352 1210300 ~ 1212899 (+)
XLOC_035354 NA coding downstream 36652 1220600 ~ 1227069 (+)
XLOC_035355 NA coding downstream 84005 1267953 ~ 1268972 (+)
XLOC_035356 fbxl17 coding downstream 100836 1284784 ~ 1304505 (+)
XLOC_035343 CT027631.1 non-coding upstream 190187 944232 ~ 979828 (+)
XLOC_035335 CABZ01063542.1 non-coding upstream 731789 438111 ~ 438226 (+)
XLOC_035334 FP017151.1 non-coding upstream 755420 412312 ~ 414595 (+)
XLOC_035332 NA non-coding upstream 796923 371038 ~ 373092 (+)
XLOC_035360 CU326361.2 non-coding downstream 583957 1767905 ~ 1768021 (+)
XLOC_035362 CR788303.1 non-coding downstream 742230 1926178 ~ 1930239 (+)

Expression


Co-expression Network