XLOC_035352 (slc35d2)


Basic Information

Item Value
gene id XLOC_035352
gene name slc35d2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 1187928 ~ 1206960 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069425
CACGGTAGACTCGCGAAGTTCCTCTCCGCCACCTTTTACGCTTTCTGCTCGTTCCTCATCATCGTGATCAACAAAAGTATTTTAACGGAGTATAAGTTTCCCTCGTTTATGTTTCTCGGAATCGGCCAGATGGCAGCTACTATCATCATTCTTTATGCtgctaaaatgaataaaacaattcattttCAGGACTTTGACAGAAGTATTGTTGGAAAGATCTTTCCTCTACCTCTGCTGTATGTGGGGAATCATGTTACTGGATTGGGAGGAACAAagaaattaagCTTACCGATGTTCACTGTGCTCAGAAAATTCACTATTTTACTCACCATGATCATGGAGTCGAGGATACTCAAAAAATCCTTTGCTCCGCCATTGGTCTGCAGTGTTTTGGCTATCGTTCTGGGTGCTTTAATCGCAGCCAGCTCGGATCTGTCTTTTAATGCAGAAGGATATACGTTTGTCCTGATGAACGATGTTTTCACAGCTGCCAGTGGAGTTTACACCAAGAAAAAACTGGGAATGGAGGGTCTCGGTAAATACGGCGTATTGTTTTATAAcgcattcattattattataccaACTGTGCTGGCGAGTGCGTATACGGGAGATCTACAGAAGGCTCTTACTTATGAAGGATGGCTgtcttttacatttatattttattttttactgtcttGTGTCATGGGGTTCATTTTGATGTATTCAATCATCCTCTGCAGTTACTACAACACAGCATTAACCACCACAGTCGTCGGTGCAATTAAAAATGCTGGTGTGATGTACATCGGCATGTTTGTCGGTGGAGACTACATCTTCTCATGGCCAAACTTTATAGGCTTGAATATATGCATCTCGGCTGGGTTAGTTTATTCCTACATCACATTAAGCTCTGCA
>TCONS_00069426
atgaataaaacaattcattttCAGGACTTTGACAGAAGTATTGTTGGAAAGATCTTTCCTCTACCTCTGCTGTATGTGGGGAATCATGTTACTGGATTGGGAGGAACAAagaaattaagCTTACCGATGTTCACTGTGCTCAGAAAATTCACTATTTTACTCACCATGATCATGGAGTCGAGGATACTCAAAAAATCCTTTGCTCCGCCATTGGTCTGCAGTGTTTTGGCTATCGTTCTGGGTGCTTTAATCGCAGCCAGCTCGGATCTGTCTTTTAATGCAGAAGGATATACGTTTGTCCTGATGAACGATGTTTTCACAGCTGCCAGTGGAGTTTACACCAAGAAAAAACTGGGAATGGAGGGTCTCGGTAAATACGGCGTATTGTTTTATAAcgcattcattattattataccaACTGTGCTGGCGAGTGCGTATACGGGAGATCTACAGAAGGCTCTTACTTATGAAGGATGGCTgtcttttacatttatattttattttttactgtcttGTGTCATGGGGTTCATTTTGATGTATTCAATCATCCTCTGCAGTTACTACAACACAGCATTAACCACCACAGTCGTCGGTGCAATTAAAAATGCTGGTGTGATGTACATCGGCATGTTTGTCGGTGGAGACTACATCTTCTCATGGCCAAACTTTATAGGCTTGAATATATGGTAG
>TCONS_00069427
TTAAGGtctaaacacaggaaaacaagacaagggctgcgtccgaaagtgcatacttccatactatatagtacgctaaaatcagtatgcgagccgagtagtatgtccgaattcttagaattggaaaatcagtatgcgagaagtacccggaggacttccggcgagattctggagtgcgcatcccatgcacgctgcgctatcccatgatgccccgctagagaattcatgaatggaagtgaagcttcacaactgacgcagCATCTCGGCTGGGTTAGTTTATTCCTACATCACATTAAGCTCTGCAGAAACCAACACAAAACCAGCAGAGGAGAAAATAACGGTTCATATTACAGAGAACACTCTGCTGAAAACATGACTGTCAGTGCTCAAACCCACACACAGATCAAACGGCAGTGTTTTCCTGAaggcagtgtttgtgtttgtgctgaAGGAATCGCTGC

Function

symbol description
slc35d2 Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35D2 (solute carrier family 35 member D2).

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity molecular_function
GO:0005461 UDP-glucuronic acid transmembrane transporter activity molecular_function
GO:0005462 UDP-N-acetylglucosamine transmembrane transporter activity molecular_function
GO:0005463 UDP-N-acetylgalactosamine transmembrane transporter activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0015297 antiporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080125-1 Predicted to enable antiporter activity and pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35D2 (solute carrier family 35 member D2).

Ensembl:

ensembl_id ENSDARG00000089837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069425 False 897 mRNA 0.41 12 1187928 1206803
TCONS_00069426 False 690 mRNA 0.40 9 1189798 1204800
TCONS_00069427 True 458 processed_transcript 0.46 2 1205930 1206960

Neighbor

gene id symbol gene type direction distance location
XLOC_035351 ccl27a coding upstream 3980 1170015 ~ 1183948 (+)
XLOC_035350 NA coding upstream 24687 1158751 ~ 1163241 (+)
XLOC_035349 avp coding upstream 30548 1148876 ~ 1157380 (+)
XLOC_035348 ubox5 coding upstream 53983 1118328 ~ 1133945 (+)
XLOC_035347 lzts3b coding upstream 77576 1082100 ~ 1110352 (+)
XLOC_035353 NA coding downstream 3340 1210300 ~ 1212899 (+)
XLOC_035354 NA coding downstream 13640 1220600 ~ 1227069 (+)
XLOC_035355 NA coding downstream 60993 1267953 ~ 1268972 (+)
XLOC_035356 fbxl17 coding downstream 77824 1284784 ~ 1304505 (+)
XLOC_035357 efna5b coding downstream 226687 1433647 ~ 1446207 (+)
XLOC_035343 CT027631.1 non-coding upstream 208100 944232 ~ 979828 (+)
XLOC_035335 CABZ01063542.1 non-coding upstream 749702 438111 ~ 438226 (+)
XLOC_035334 FP017151.1 non-coding upstream 773333 412312 ~ 414595 (+)
XLOC_035332 NA non-coding upstream 814836 371038 ~ 373092 (+)
XLOC_035360 CU326361.2 non-coding downstream 560945 1767905 ~ 1768021 (+)
XLOC_035362 CR788303.1 non-coding downstream 719218 1926178 ~ 1930239 (+)

Expression


Co-expression Network