G1605001


Basic Information

Item Value
gene id G1605001
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 24171612 ~ 24172955 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1837432
ATAGATCACTAAAGAAGGCTCAAGAACCCTCTGGTTAACAATGTGACTGCAATTGATAAATCAAACATAAATATGAATCGCCCACTTTCTTTGATGGCGCAAATCATAACCAGTGCGTTAAGTTGGTTTGCATTCCTAAGTCCTGACCAACATTATCAGCTCACAGAGGTTTCTCTGGTCTGCGAACGACAATGTCGAAATTGGGTTTTGTGTCTTGGCCGAACCCTCGACTACGATTCAATTATACGTGTTTTAAAGCGGATCAGGTTTGAGCTCCTGTGTATTTTGACAAGACTGTTCAATCCACTGTATTCCCACTCATCTCTGATTTAAGATTTGGCTTCACAGATTCGCATCTAATCATGCAACTGATGTTGATTTCACAGTTGATCCATAATCAACACCCTTCTGCCTTTACCAATATTCACGAGGATGCTCAAGCATGTGGTCAAAACGGTCAGTGTGAGGAGTTATCAAAGCCAGTGTTTTGCCTCACTTGGAACTGAGGAAACCAGCAGCAGACAGGCAGTGAAATCCATTATGAAagcgtttttttatttttattaaaaaacATGTTTGTGTACTGGTGATGGCGCATGTAAAGTATATAATCCTTGATTTGCTGGAGGAGGATTGGAAATGACAATGATAAATGTGTATAATTTCAAAGGCTACTGACCTTGATAGGGAAAAGATAAGCCGCACATTCATCTCTTCTTTATTTTACTAACATTTTGGCTAAAAAGCCTTCATCAGAGTATTTCACCCTGATTTAAGAGACTTATATGAAACCGTGAAACTGATCGACACTCAGAGATTAGCCTAAAGATTGGAAGGTTGGGGGTTCAATCCCCGGGTGAGTCATAACCAAAGAAGACTCAACACCTCTTTGCTTGAAACTCAGCATAAGGCCGTGCGATAGACCAGCTTCTTGACCatggggtgtacttgtacattaAGCAGTCTCATGCTACAGGAATAGGAGATTGGGCAAGCTATTTACTCTTACAGCAAGAAGAGATGAGTGTGcgactttattttttatttgtatagtATCTTTCGCTAGTCTGCACCTCACCAAAAGGGTGTGTGTTCTTTATGTTTTTacttaacagattgtgtacagaccTTATATTTATTTCAGTCATAGAAAACAATCTCTACATCAAATTACATTCAGTTACCTTACAGCTAATCTGCCATTGAGAAAGATTGGATAAGCACCTCTAAAGGCCCTGAGAAGTGTACACATTCTATCAATGATTGGTCAACACGTTTTACATGTGTATACAAAATACTTCATGTGAGTAACATTCACCATTCACCAATAAATTGATTATGAAA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1837432 True 1344 lncRNA 0.39 1 24171612 24172955

Neighbor

gene id symbol gene type direction distance location
LOC110497537 LOC106602955 coding downstream 11880 24058372 ~ 24159732 (-)
LOC110498671 bre coding downstream 604513 23424239 ~ 23567099 (-)
LOC110497480 LOC106602906 coding downstream 813783 23348571 ~ 23357829 (-)
LOC100305151 styx coding downstream 844017 23319201 ~ 23327595 (-)
LOC110497482 LOC106610017 coding downstream 1002618 23121508 ~ 23168994 (-)
gpr137c LOC106602981 coding upstream 3377 24176332 ~ 24206622 (-)
LOC110497541 LOC106602991 coding upstream 144378 24317333 ~ 24345566 (-)
LOC110497542 LOC106603001 coding upstream 201603 24374558 ~ 24385860 (-)
LOC110497543 LOC106603011 coding upstream 225615 24398570 ~ 24475536 (-)
LOC110498563 fabpl coding upstream 367026 24539981 ~ 24541835 (-)
G1604993 NA non-coding downstream 10118 24161272 ~ 24161494 (-)
G1604992 NA non-coding downstream 10389 24160783 ~ 24161223 (-)
G1604979 NA non-coding downstream 33208 24103257 ~ 24138404 (-)
G1604963 NA non-coding downstream 102976 24068360 ~ 24068636 (-)
G1605002 txndc16 non-coding upstream 82290 24255245 ~ 24256435 (-)
G1605054 NA non-coding upstream 88584 24261539 ~ 24262080 (-)
G1605055 NA non-coding upstream 89327 24262282 ~ 24263132 (-)
G1605061 NA non-coding upstream 95569 24268524 ~ 24268758 (-)
G1605116 NA non-coding upstream 176527 24349482 ~ 24349771 (-)
G1604902 NA other downstream 197506 23973790 ~ 23974106 (-)
G1602763 NA other downstream 1755569 22415418 ~ 22416043 (-)
G1602753 NA other downstream 1767775 22403516 ~ 22403837 (-)
G1600030 NA other downstream 4035051 20127211 ~ 20136561 (-)
LOC118941548 fabpl other upstream 379583 24552373 ~ 24554024 (-)
LOC110497546 LOC106603015 other upstream 637765 24792012 ~ 24844151 (-)
sptlc2a sptlc2 other upstream 679514 24847088 ~ 24908731 (-)
G1606398 NA other upstream 1209805 25382760 ~ 25395212 (-)

Expression


Co-expression Network