Gene
RNA
| Item | Value |
|---|---|
| gene id | G1605002 |
| gene name | txndc16 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 24255245 ~ 24256435 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| txndc16 | Orthologous to human TXNDC16 (thioredoxin domain containing 16). |
| description |
|---|
| thioredoxin domain-containing protein 16 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1837433 | True | 1031 | lncRNA | 0.45 | 2 | 24255245 | 24256435 |
24,253,200
24,253,600
24,254,000
24,254,400
24,254,800
24,255,200
24,255,600
24,256,000
24,256,400
24,256,800
24,257,200
24,257,600
24,258,000
24,258,400
24,258,800
24,259,200
NC_048583.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gpr137c | LOC106602981 | coding | downstream | 48623 | 24176332 ~ 24206622 (-) |
| LOC110497537 | LOC106602955 | coding | downstream | 95513 | 24058372 ~ 24159732 (-) |
| LOC110498671 | bre | coding | downstream | 688146 | 23424239 ~ 23567099 (-) |
| LOC110497480 | LOC106602906 | coding | downstream | 897416 | 23348571 ~ 23357829 (-) |
| LOC100305151 | styx | coding | downstream | 927650 | 23319201 ~ 23327595 (-) |
| LOC110497541 | LOC106602991 | coding | upstream | 60898 | 24317333 ~ 24345566 (-) |
| LOC110497542 | LOC106603001 | coding | upstream | 118123 | 24374558 ~ 24385860 (-) |
| LOC110497543 | LOC106603011 | coding | upstream | 142135 | 24398570 ~ 24475536 (-) |
| LOC110498563 | fabpl | coding | upstream | 283546 | 24539981 ~ 24541835 (-) |
| LOC118941548 | fabpl | coding | upstream | 295938 | 24552373 ~ 24554024 (-) |
| G1605001 | NA | non-coding | downstream | 82290 | 24171612 ~ 24172955 (-) |
| G1604993 | NA | non-coding | downstream | 93751 | 24161272 ~ 24161494 (-) |
| G1604992 | NA | non-coding | downstream | 94022 | 24160783 ~ 24161223 (-) |
| G1604979 | NA | non-coding | downstream | 116841 | 24103257 ~ 24138404 (-) |
| G1604963 | NA | non-coding | downstream | 186609 | 24068360 ~ 24068636 (-) |
| G1605054 | NA | non-coding | upstream | 5104 | 24261539 ~ 24262080 (-) |
| G1605055 | NA | non-coding | upstream | 5847 | 24262282 ~ 24263132 (-) |
| G1605061 | NA | non-coding | upstream | 12089 | 24268524 ~ 24268758 (-) |
| G1605116 | NA | non-coding | upstream | 93047 | 24349482 ~ 24349771 (-) |
| G1605118 | NA | non-coding | upstream | 95445 | 24351880 ~ 24352171 (-) |
| G1604902 | NA | other | downstream | 281139 | 23973790 ~ 23974106 (-) |
| LOC110497482 | LOC106610017 | other | downstream | 1110701 | 23121508 ~ 23168994 (-) |
| G1602763 | NA | other | downstream | 1839202 | 22415418 ~ 22416043 (-) |
| G1602753 | NA | other | downstream | 1851408 | 22403516 ~ 22403837 (-) |
| LOC110497546 | LOC106603015 | other | upstream | 554285 | 24792012 ~ 24844151 (-) |
| sptlc2a | sptlc2 | other | upstream | 596034 | 24847088 ~ 24908731 (-) |
| G1606398 | NA | other | upstream | 1126325 | 25382760 ~ 25395212 (-) |
| dio2 | dio2 | other | upstream | 1421913 | 25678207 ~ 25686102 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| bowfin (Amia calva) | AMCG00013967 | NA | misc | CM030125.1 | CM030125.1 | 48455903 ~ 48479577 (-) |
