XLOC_035361 (snap29)


Basic Information

Item Value
gene id XLOC_035361
gene name snap29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 1839695 ~ 1856656 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069437
GTCCGAGCAAAAGCGTCAGCTGATAACaggagaacagaacagaacacttCACCTCTTCCAGCGACCAAAGCACAGGATGTCTGCCTACCCCAAATCCCACAATCCTTTcgctgatgatgatgaagaagaggaCTCGCGCGCGGCTCCAAGGAGAGGCTTTAACTTCGATGATGATCCGGAGGAGAGTTCGCTGAGTCCGGCAGAGAGACGGCAAAGGCAGCTGCAGCAGGAAGTGATGCGTACAGCTCAGTCCGCCGTGGACAGCAGCCACCGCTCGCTCGGACTTATCTACGAATCAGAGAAAGTCGGTGCTGAAACCGCAGAGGAACTGATCCGTCAGGGAGAGGCTCTGAAGAGGACAGAGAGAATGATCGACAACatggagcaggacatgaggacGAGCCAGAGGCACATAAACACCATTAAGAGTGTGTGGGGGGGGATGGTCAACTATTTCAAAGGCAAACCTGAACCACCCAAACCAGCACAGAAGGACCAGCCGGTGTGTTACGAGGCCAGCAGCAGGCTACAGACGGCGCTTGCGGAGAGCAAACAGCAAGAAGACAAATATCAGGCCAGTCATCCAAACCTCAGGAAACTGGAAACatctgGATTCGGAGCTTCTGCTGCTCTTGATAACGGCTCGTCTGATCAGAACGGATTTCCCAAAAACAAACAGCTGCGAGCCGCTCACCAGCAGCTGGACAGAAACCTGGATGAGATGTCTCTGGGTCTGGGCCGGCTGAAGAATCTGGGTCTGGGCCTGCAGACGGAGATCGATGAGCAGGACATTTCTCTGGACGCTCTGCTTAATAAAGCCGACACCATGGACGGGAAGATCAGCTCCACCAACCGGCAGCTCAAAAGCCTTAAATAGACTCAGAGGGTGATGTCACTTCCTGGAGGCGTGGCCAAGGTGATCATAATTGAAAACATGTGCGCTCGTAAAACATTTCTCAAGTTCTCTCCAAGATAAGGAGGAGTGTGTTGGACAGAGAAAGTTAAAACAAAATAAGAGACTTAAGGAAGAACACATGATGgtgtgagaaaaaaaacattatagtaaCAATGATGATAAattgttgtcttttttttatgcaaatattgATTATtgaaggaacagttcacccaaaacaaagcattcactcactatttactctccctcaagcgTTTCAAAACCTTTACGAGTTTTTTTCTTccattgaacactaaagaagatgttttgaagaatgctgaaaaccggtaaccattgacttccatagtaggaaaaacaaatgctatggaagtcaatggttaccattttcttagcattctttaaaatatctaatttgTTTATCAAAAGAatgaaaatcataaaggtttgaaacgagtaaagggagagtaaatgatgaccgaatttcaatttttgggtgaactgtccctttaagagaatATATGGTTGTTTCTACTGGAAAGCAAGACAAAAAATGAGTGGGAGATTAGAAAATCATTAGTCACTAATTTACTCGAATTGTAAATATACTGGATTAGGGTTACACTGTTTATAAGCCTTGAGTTAAAAATGTtccctgtaaaaaaaattaaagcaaagtTTGTCAGACATGCACACCACAATCACTGCaatccttaaagggacagttcaccccaaaataaaattcTGTTGTCATTTACTGGTGTCTTTCTTCTGGtcatcacaaaagaagatacactgaagaatgctaaaaaagaAAACCTATAGTATGGATGTTAATGTCTGTTTTTCctccccaacattcttcacaatatcttcttttgtgttcagcagaagaaagaaattacTAAGCGTTTGGAACTTGCGTGTGAGTGtttatgctatgtttttttttctgctagtATGGTCCTGGTAATTTTCACATTCAATCCATCTCAGCATTGCACTGTGCCATTGTATTTCCCCCTGTGCTCAGATTTTATGTTTGTTAAAGTTATAGTTCACCCTGAAATTTAATTTTACTgaccctcaagtgtttccaaacctttgaattcctttcttctgttgaacactaaaagaagatattttgagcaatgctgaaaactggtaacattcctcaaaatatattctttaatgTTTATCAGAAGAATGAAAATCATAAAGTGTTaaaacaagggtgagtaaatgatgaccgaattttaatttttgtgtgaactgtccctttaagagagtACACGGTTATTTCTACTGGAAAGCGAGACAGAAATACAGAGTGGGAAGTTGAGTTTTGCCTTTATTAGTCATAGTACGTTACTCCAATTTTAAATAAGCTGGTTTAGGGATGAACTGTTTATAAGCTTTGAGTTAAACATGCTACCTGTAGAAAACTAAAATACAGTGTGTCAGACATGCACACCACAATCACTGCActccttaaagagacagttcactccaaaataaaattgtcatcatttactggtgtctttcttctgttaaacacaaaggaagatacacTGACGAATGCTGAAAAGATAACagccattggcttccatagtattgtTTAGAttctactatggatgttaatgTCTGTTTTCCCTCctcaacattcttcacaatatcttcttttgtgttcaacagaaggtaACTGAGCAAAATTGGgtttaatgttatatataaatgTGAAATCTGCATTCATCAGACATTTTTATAAGTGTTTCTGCTCATTTTTCTGCTCATTATGTGCTATTACGGTCCTGGTTATCAGATCACGAGAGAAAGATATTGCTTTGCCTTAATTTTCACATTTAATCCATCTCAGCATTGCACTGTGCCGTTACTGAATACTGaagaattgattttttttttatctgactaTAGATGTCAACATTTGTTTTTCCacctcaacattcttcagaatatcttcttttgtgttcaacagaagacattgataaaggttttgaaccagtaaatgaaatgtatatttttgggtgaactgcccctttaactgtgcaaaattgggttaaaaatgtatttaaaatgtgaaaTCTGCATTCATCAgacatttttataattctttatGCTCATTTTGTGCTAGTACGGTCCTGGTTATCAGATCACGAGAGAAAGATATTGCTTTGCCTGAAGTTTCACATTTAATCCATCTCAGCATTGCACTGTGCCGTTGCATTTCACCCTGTGCTCAGATTTAATGCTTGTTAAAGttatagttcaccctaaaatttaaCTTTATTGaccatcaagtgtttccaaacctcagagtttttttcttctgttgaacactaaagaagatattttgaagaatgctgaaaaccgctAACCTAATTTACTCTAATTAAGCTGGTTTAGGCATCAATTGTTTATAAGTTTTGAGTTAAAAATGTTCCTTGTAAAAAATCTGACATGTGCACACCACACTTTTACCACTTTACAATCACTGCACTGCtaaatggacagttcacccaaaaatataattctgtcttcatttactagtgtgtttcttctgttgaacactaaaaaggatattttgaaaaatgcagaAAACTATTATCCATTGACTATCTTTTTTAAAACAGGTTTGAAAccagtaaagagtgagtaaatgatgtcttcgggtgaactgtccctttaagaatgaatgaatatgtgagACAGAAATACAGAGTGGGAAATTAAGTTTTGCATTCATTAGTCTCTAATTTACTCTAATTGTAAATAAGCTGGTTTAGGGATAAACTGTTTATAAACTTTGAGTTAAAAATTTTCCCTGTAGCAGAAATAGTTTGTCAGACATGGACACCACACTTAAACCATTTTACAATCACTGCactgcttaaagggacagtttacccaaaaatacaatgctctcatcatttacttgtctttcttctgttgaacaccaggATTTTGTGTTTTATCCTGCTATGGATGTCAACATCTGTTTTTCCTgctcaacattcttcagaatatcttcttttgtgttcaacagaggaaagacaTTGATAAAGGTTTTAATCCACTTGTGAgtgaatgaaatatatatttttttgggagaacTGCCCCTTTAACTGTGCATAATTgggtttaaaaataatataccGTAAAATCTGCATTCATCATGCatctttataattttttatgctcattttacatgttttttctgCTAGTACGGTTACGAGAGACGAAGATATTGCTTTGCCTGAAGTTTCACATTTAATCCATCTCAGCATTGCACTGTGCCGTTGCATTTCACCCTGTGCTCAGATTTATTTaaggtacagttcacccaaaattgcaATTTTACTGACCTTTGAGTGTTTCCAGACCTTTACtaagttaaaaaaagttattttggaaaatgttggaaacctgtagccattgactttcttagtagaaaaacaaatacaatggcagtcaatggttaccggttttcagcattcttcaaaatatcttcttttagtgttcaacagaagaatgatacaagtaaagggagagtaaatgatgaacgatttttcatttttgtgtgaactgtccctttaagagaatATATGGTTGTTTCTACTGGAGAGCGAGACACAAATACAGAGTGGGAAATTTAGTTTTGCCATTATTAGTCACTAATTTACTCTAATTGTAAATCAGCTGGTTTAGGGATAAACTGTTTATAAACTTTGAGTTAAAAATGTTTCTTGTAAAAAATCTGACATGTGCACACCACACTTATACCACTTTACAATCACTGCacttcttaaagggacagctcacctcAAAATAAAACTCATCATTTACTAGtgtcttctgttgaacccaaagaaattattttgtttaatcctgctatggatgtcaaggtttttttcctcatcaacattcttcacaatatcttcttttgtgttcaacagaagacattgataaaggttttgaaccacttgtaagtaaatgaaatgtatatttttgggtgaactgcttCTTTAACTGTGCAAAATtgggtttaaaataatataatgtgaaATCTGCATTCATCAGACATATTTATAATTCCTTATGctcattttacatgttttttctgCTAGCACGGTCCTGGTTATCAGATTAAGAGAGACTAAGATATTGCTTTGCCTGAAGTTTCACATTTAATCCATCTCAGCATTGCACTGTGCCGTTGCATTTCCCCCTGTGCTCAGATTTTATGTATATTAAAGTTATAGTTCATCCAGAAATGAATTTACACACCcttaagtgattccaaacctttatgagtgtctATCTTCTGTTAAACTCgataagaagttattttgaagaatgctgataacctgtaacaattgacttctatagtaggaaaaacaaatactatggaagtcaatggttaccggtttgcaacattcttcaaagtatcttctttcatgttcaacagatgaaagaaactctggAGAAACAGGATGGGAGAGTAAATgataactttttgtttttgttttttggtgaactataacTTTAATCATGCACTATTGTGATGGAAAACCCCATCAAACATCTACTAACCTTCAATGGAGTGACTGAGAGGAGTTATGTTGGGTTATTCTGTTTTAATGGGTCATCTGTTATTTCCTTTCTCTGGTTTATATATGAGGGTAGCTTTATATTATCTACCAGAAACATTGTACTGTTGTTTCTGAGTTTGAAACTCACTGTTCACACATTGTCGTCCTGTTCAAGGGATTTTGTCTGatgaatgtgacagatgtgaataaaataaaaggttttaatTTGTGAA
>TCONS_00069438
AACaggagaacagaacagaacacttCACCTCTTCCAGCGACCAAAGCTCAGCTCTGTCTTCTGGCTTCAGCACAGGATGTCTGCCTACCCCAAATCCCACAATCCTTTcgctgatgatgatgaagaagaggaCTCGCGCGCGGCTCCAAGGAGAGGCTTTAACTTCGATGATGATCCGGAGGAGAGTTCGCTGAGTCCGGCAGAGAGACGGCAAAGGCAGCTGCAGCAGGAAGTGATGCGTACAGCTCAGTCCGCCGTGGACAGCAGCCACCGCTCGCTCGGACTTATCTACGAATCAGAGAAAGTCGGTGCTGAAACCGCAGAGGAACTGATCCGTCAGGGAGAGGCTCTGAAGAGGACAGAGAGAATGATCGACAACatggagcaggacatgaggacGAGCCAGAGGCACATAAACACCATTAAGAGTGTGTGGGGGGGGATGGTCAACTATTTCAAAGGCAAACCTGAACCACCCAAACCAGCACAGAAGGACCAGCCGGTGTGTTACGAGGCCAGCAGCAGGCTACAGACGGCGCTTGCGGAGAGCAAACAGCAAGAAGACAAATATCAGGCCAGTCATCCAAACCTCAGGAAACTGGAAACatctgGATTCGGAGCTTCTGCTGCTCTTGATAACGGCTCGTCTGATCAGAACGGATTTCCCAAAAACAAACAGCTGCGAGCCGCTCACCAGCAGCTGGACAGAAACCTGGATGAGATGTCTCTGGGTCTGGGCCGGCTGAAGAATCTGGGTCTGGGCCTGCAGACG
>TCONS_00069439
GAACTGATCCGTCAGGGAGAGGCTCTGAAGAGGACAGAGAGAATGATCGACAACatggagcaggacatgaggacGAGCCAGAGGCACATAAACACCATTAAGAGTGTGTGGGGGGGGATGGTCAACTATTTCAAAGGCAAACCTGAACCACCCAAACCAGCACAGAAGGACCAGCCGGTGTGTTACGAGGCCAGCAGCAGGCTACAGACGGCGCTTGCGGAGAGCAAACAGCAAGAAGACAAATATCAGGCCAGTCATCCAAACCTCAGGAAACTGGAAACatctgGATTCGGAGCTTCTGCTGCTCTTGATAACGGCTCGTCTGATCAGAACGGATTTCCCAAAAACAAACAGCTGCGAGCCGCTCACCAGCAGCTGGACAGAAACCTGGGTGAGAAACACAAGAGCAGCTTCTCTCATACCTCCATCTGTGGAGTCCGGatgtgacagtgtgtgtgtgtgtgtttgtgtcctccAGATGAGATGTCTCTGGGTCTGGGCCGGCTGAAGAATCTGGGTCTGGGCCTGCAGACGGAGATCGATGAGCAGGACATTTCTCTGGACGCTCTGCTTAATAAAGCCGACACCATGGACGGGAAGATCAGCTCCACCAACCGGCAGCTCAAAAGCCTTAAATAGACTCAGAGGGTGATGTCACTTCCTGGAGGCGTGGCCAAGGTGATCATAATTGAAAACATGTGCGCTCGTAAAACATTTCTCAAGTTCTCTCCAAGATAAGGAGGAGTGTGTTGGACAGAGAAAGTTAAAACAAA

Function

symbol description
snap29 Predicted to enable SNAP receptor activity and syntaxin binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; pronephros morphogenesis; and regulation of neuron projection development. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process
GO:0006887 exocytosis biological_process
GO:0016082 synaptic vesicle priming biological_process
GO:0006906 vesicle fusion biological_process
GO:0050905 neuromuscular process biological_process
GO:0072114 pronephros morphogenesis biological_process
GO:0010975 regulation of neuron projection development biological_process
GO:0008544 epidermis development biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04140 Autophagy - animal
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-041111-226 Predicted to enable SNAP receptor activity and syntaxin binding activity. Acts upstream of or within several processes, including epidermis morphogenesis; pronephros morphogenesis; and regulation of neuron projection development. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Used to study CEDNIK syndrome. Human ortholog(s) of this gene implicated in CEDNIK syndrome. Orthologous to human SNAP29 (synaptosome associated protein 29).

Ensembl:

ensembl_id ENSDARG00000038518

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069437 False 5756 mRNA 0.37 6 1839695 1856656
TCONS_00069438 False 772 mRNA 0.54 6 1839719 1851672
TCONS_00069439 True 773 mRNA 0.51 3 1843135 1851911

Neighbor

gene id symbol gene type direction distance location
XLOC_035359 serpind1 coding upstream 57962 1766206 ~ 1781733 (+)
XLOC_035360 CU326361.2 coding upstream 71674 1767905 ~ 1768021 (+)
XLOC_035358 rasal1b coding upstream 156750 1651821 ~ 1682945 (+)
XLOC_035357 efna5b coding upstream 393488 1433647 ~ 1446207 (+)
XLOC_035356 fbxl17 coding upstream 535190 1284784 ~ 1304505 (+)
XLOC_035362 CR788303.1 coding downstream 69522 1926178 ~ 1930239 (+)
XLOC_035363 FQ377940.1 coding downstream 123167 1979823 ~ 1979937 (+)
XLOC_035364 NA coding downstream 140779 1997435 ~ 1998562 (+)
XLOC_035365 NA coding downstream 310306 2166962 ~ 2176376 (+)
XLOC_035366 NA coding downstream 328982 2185638 ~ 2190140 (+)
XLOC_035355 NA non-coding upstream 570723 1267953 ~ 1268972 (+)
XLOC_035354 NA non-coding upstream 612626 1220600 ~ 1227069 (+)
XLOC_035353 NA non-coding upstream 626796 1210300 ~ 1212899 (+)
XLOC_035350 NA non-coding upstream 676454 1158751 ~ 1163241 (+)

Expression


Co-expression Network