Gene
RNA
| Item | Value |
|---|---|
| gene id | G1607339 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 26908313 ~ 26909511 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| E3 ubiquitin-protein ligase SHPRH isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1839969 | True | 321 | lncRNA | 0.51 | 2 | 26908313 | 26909511 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| si:ch73-242m19.1 | LOC106603381 | coding | upstream | 42583 | 26836810 ~ 26865730 (+) |
| LOC110497580 | LOC105015400 | coding | upstream | 72819 | 26816246 ~ 26835494 (+) |
| afg1la | LOC106603355 | coding | upstream | 92740 | 26808065 ~ 26815573 (+) |
| LOC110497575 | LOC106603291 | coding | upstream | 145306 | 26738990 ~ 26763007 (+) |
| LOC110497572 | LOC106603272 | coding | upstream | 189084 | 26706230 ~ 26719229 (+) |
| grm1b | LOC106603413 | coding | downstream | 4534 | 26914045 ~ 26941427 (+) |
| LOC110498694 | LOC106603854 | coding | downstream | 32154 | 26941566 ~ 26946121 (+) |
| LOC110497586 | LOC106603443 | coding | downstream | 73929 | 26983440 ~ 27037968 (+) |
| LOC110497587 | NA | coding | downstream | 130750 | 27040261 ~ 27130655 (+) |
| zbtb24 | zbtb24 | coding | downstream | 231879 | 27141390 ~ 27149328 (+) |
| G1607315 | NA | non-coding | upstream | 12606 | 26877667 ~ 26895707 (+) |
| G1607319 | shprh | non-coding | upstream | 15125 | 26892603 ~ 26893188 (+) |
| G1607320 | NA | non-coding | upstream | 16893 | 26890725 ~ 26891420 (+) |
| G1607200 | LOC104954850 | non-coding | upstream | 117178 | 26783498 ~ 26791135 (+) |
| G1607217 | LOC106603250 | non-coding | upstream | 202671 | 26658255 ~ 26705642 (+) |
| G1607361 | NA | non-coding | downstream | 36627 | 26946138 ~ 27024335 (+) |
| G1607401 | NA | non-coding | downstream | 147500 | 27057011 ~ 27097706 (+) |
| G1607452 | stx11 | non-coding | downstream | 244913 | 27154424 ~ 27158501 (+) |
| G1607487 | LOC106603506 | non-coding | downstream | 320139 | 27229650 ~ 27234104 (+) |
| LOC110497557 | gcfc2 | other | upstream | 629006 | 26261361 ~ 26279307 (+) |
| LOC118941466 | NA | other | upstream | 905775 | 25973345 ~ 26002713 (+) |
| G1606716 | NA | other | upstream | 1083487 | 25824484 ~ 25824826 (+) |
| G1605451 | sptlc2 | other | upstream | 2054376 | 24851175 ~ 24853937 (+) |
| LOC110497498 | LOC106610000 | other | upstream | 4446691 | 22423424 ~ 22462109 (+) |
| G1607702 | NA | other | downstream | 610452 | 27519963 ~ 27522078 (+) |
| G1607901 | NA | other | downstream | 954612 | 27864123 ~ 27864595 (+) |
| G1609741 | NA | other | downstream | 1732822 | 28642333 ~ 28646521 (+) |
| cdan1 | cdan1 | other | downstream | 1886881 | 28796261 ~ 28816106 (+) |
| G1610576 | NA | other | downstream | 2450767 | 29360278 ~ 29360735 (+) |
