G1608863


Basic Information

Item Value
gene id G1608863
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27035302 ~ 27037775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1841663
TTTAACTGGCAATGAAAACAAATCCGAAAGTGAAGCAAGTCTGTATTTTACTGGGAAATGACACAGTTAACGTTCCCATATTTTGGTCCCTCAGAGAAATGAAcaagaaaaaatacaaaacaaaacaagtgGTTCAAGGTGCGAAACAGTGCAAAACCACACAACAgctctttacaatatatgtagCTCAGTAGTACGAGAAATAACACATCCGGTCAAAAGAAAATCTACTTTTTCTGGGTCTTCTGCACACAGGTACATACATGTAATGTGGCAAGTTACAAGGTTAGGGAGTGACAAGCATGGAGAAGCTGTTCCACCATGTTCCAAACAGTATGGTCTATAGTTATCACATCCAGACTGTTGGGAGTTTGGACAGACAAGACAACAGTGTATAATTAAGCAACTCTTTGGTGTCAGAAAATAAAATGGCTGCTGACCTGTCTCATCTGAGACCCAAATGGCaacccttttccctatgtagtgcactacttttgaatagggtgccatttggAACCAACACTATCAGATTTGTCTCCAGTTGTCTTGTCGCACTACTCATTTATTTACAGCTTTTGGCTGGGGTGAAAACAATCTGTAGTCTCTTATTTGGAATCAAGAACATAAGATAAACGCGTCTACCTCAACACAAATGGCAGCATCTCCTTGCACCGGGCTAAAAAAGAAAATCACGCTGAAAAACACCATTAaggaaaaatatatactgtaagtATAAATATGTGCCCATACACATATCTGAATATATGTAcgttcacaaacacacagatatacacatacATAGGTAGAGGTTAGCATATACGCATCATGATAAGCAAAGGCGGAGGAGAGTTGTCTGTAAAATAGCAGTCGATTCAGAGAATAATAACCAAAGAATGTTTTACCGCACATCAAGTGACACCTGTTCACATCTTCTACTGACGCTACGAATACAAAGACAGTAAGTTTATATCTGTATCCTTGTGATGGAACAGACATGCTTTCTTTTCTAAACATTAAAAACGATTTAAAATGAATAAGCCATGAGTGGTATGAATCAAATTGTCCGATTAGAATCAGTATCGCAAAGGATTGTGAGAAGACTCCAACCTGTATACAGTACCGCAATATTACCACATTGTGTAGTATGTTGAGGAAGAGTTGTAGGCCTTTCGGTATCGCTTAGGTACAGATTTAGGATTAGCTAGAATCCCCTCCCACAACCATTAGTGAGGAAAAcactaaactgacccaagatcagcatatagggggcaacttcaccctattCCGTTGTACATAACTCTTATCTCTCAGCCAATCAAGAGCCCAGAGCAAAAATACAAAGCTGGCACTGACGTCATTCTAAGGCCATACCTCTATTAGTACGATAGAACTGCTAAGTGTTTTCAACATACGAATCCATCACGTTTTGGTCATATTAATGTATACTTAATTGTGTCTAGTGGGTTCAGTAAGAGCCTGTACTATTTTCACTCGGCACACGCAACAGCTGATAACTCACTCTCCATAACCAGTTCAACTTTTACCTTTCAGTAAACAAACATGGGAACTGTATAGTATGACTTCCTGCTTCCAAACAAATCTGATAGGAAAACAAACCCTGATAATAAGTCTAACCAGGCCTACTGTAAGTAGGAGAAAAGATAGGTTATATTGATGGTGTGATAAGAACCTATCAATAAACTCATGGTTAATTAAGTGAGTGGATGGACTCCTGAAAAACAAACTGTCTCAAATAATGACTCGCATGAAAGACGACACAAATCAGTAGGAAAAAAAGGAATGACTTGAGACAAAACACAGAGGGGGTGAATCAATCACTGATTCATCCTTTCATCACCATTGCTATAGATATTGAGACTTCAAGAGCAGAGAGCTGGCGCCACTGACTGTGGTTTCCGTGGAGCTTCCTCCACACACAGGAGACTCCCCTTAGAGGTCCCTTGCGATTGGTTGACACTGAAGAGCAGGCATCACCTCACCTGGACACTGCACAGGTAATCACAGGCAACCTAACGGTGCTCATTTTGAGTAGAATTGCCCTACCTCGTGGACAACAAAGCAGCTGAGAACAGGACTGATAAAACACAGGAGCAGCACCCATACATTTAGGCTCCCCTGTGGTGTGTTAAGGAAATGAACATAATCTCTTTCAGATGACATAGAAACACCCAGAATAACTTTCCTCCTCTGTTCCTtctaagtctgtctgtctgttagtctaCTCCTCTTCATTGGTAACCAGGTGACTGAGGTAATGCAGAGTGTTTTATTGTGCTGCTAGGAGGAAGGCATCAGTCTGTTAGATAACACTTCCTCCTGCAgagagatgaagaagaggaggagctgCATCTCCTGTAGAGGAAGAGGTGCGAGCAGAGAACTGAGGCCCACTGTCTCCTCTCGCTGCAATCAAAGCTGATACCACTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1841663 True 2449 lncRNA 0.41 2 27035302 27037775

Neighbor

gene id symbol gene type direction distance location
shprh shprh coding downstream 122834 26887874 ~ 26912468 (-)
LOC110497584 LOC106603407 coding downstream 147562 26872950 ~ 26887740 (-)
fbxo30a LOC106603398 coding downstream 162482 26864882 ~ 26872820 (-)
LOC118941467 LOC100194722 coding downstream 190314 26842012 ~ 26844988 (-)
LOC110497578 scml4 coding downstream 226598 26791372 ~ 26808704 (-)
LOC110498695 NA coding upstream 93934 27131709 ~ 27139457 (-)
trnal-uaa-59 NA coding upstream 115843 27153618 ~ 27153700 (-)
LOC110497590 stx11 coding upstream 117357 27155132 ~ 27161015 (-)
LOC110497591 LOC106603863 coding upstream 131132 27168907 ~ 27173184 (-)
syne1b LOC106603506 coding upstream 175509 27213284 ~ 27350889 (-)
G1608712 NA non-coding downstream 72003 26698692 ~ 26963299 (-)
G1608804 LOC106603381 non-coding downstream 177813 26856243 ~ 26857489 (-)
G1608763 NA non-coding downstream 268143 26766851 ~ 26767159 (-)
G1608672 NA non-coding downstream 420878 26614211 ~ 26614424 (-)
G1608574 NA non-coding downstream 423078 26611107 ~ 26612224 (-)
G1608904 NA non-coding upstream 25952 27063727 ~ 27065477 (-)
G1609001 NA non-coding upstream 194516 27232291 ~ 27291107 (-)
G1609062 NA non-coding upstream 346702 27384477 ~ 27387965 (-)
G1609081 NA non-coding upstream 380167 27417942 ~ 27418188 (-)
G1609082 NA non-coding upstream 380632 27418407 ~ 27418633 (-)
G1608844 LOC106603413 other downstream 93922 26937870 ~ 26941380 (-)
G1608576 NA other downstream 424319 26584938 ~ 26610983 (-)
G1608529 NA other downstream 607999 26424031 ~ 26427303 (-)
ston2 ston2 other downstream 1201925 25825790 ~ 25876073 (-)
G1608988 LOC106603498 other upstream 157973 27195748 ~ 27201735 (-)
G1608992 NA other upstream 168455 27206230 ~ 27207354 (-)
nkx2.9 nkx2-8 other upstream 840686 27877963 ~ 27879920 (-)
plekhh1 LOC106602716 other upstream 1198821 28205649 ~ 28269202 (-)
crip1 crip1 other upstream 1604513 28642288 ~ 28650251 (-)

Expression


Co-expression Network