G1607487 (LOC106603506)


Basic Information

Item Value
gene id G1607487
gene name LOC106603506
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27229650 ~ 27234104 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1840139
CTCAACTCTATCCTCTTTTTTTTTACTATGAAAGGGTGCTAGAAGCCAAGTCACCCAACATTAAAATCGAACCAAGGGGGCCAGTAGATGTCATCCCTAGGCTTACCGGTAGGCGTATGAGCTTCTTGTAGTAGCGCTCCACACGTCCGAACACCTCCTGGCAGTATCTCTGCAGCTCTTCCAGCTCCTCCTCTATAACAGCGGCATCCAGAGGCTCACTCTTCTCTAGCAGCACCTCACCCTGGTGGAAGATGTGCTCAATCTTCCCAGTGGTCAGAGAGATTTCCTGCTGGAACGCCCTGAGCTGTTTGATCTTGGCCTGGATATCACACTCTGAGAAGTGCTCTATGTTGGTGAGCTGCAGGTCCATCTCCGTGAGCCACACCAGGATGCTGTCTCTGGCCGTCTCAAACTCCTCACGCTGACTGATAAAGTGCTTGAGTCTGCGGAGGATGGAGGCCACCCTCTTCTGCAGGTTGTCCCAGCGCTGGTTCCCGTCGTGGGCCATCTCCCGGAGGCGACAGGAGGAGTCGGTGCGGTTCTCCCTGGCCAGACGGCGGTACTGCTTATTGATCAGCTCCAGCTGGGTCAGACTCTCATGGACCTGACGTTGGAATGCCTAACTTCTTTAGTTCTTCCTTGGCCACAGTGTAGAGCACGCCTGAAGAGTTGGGCAGAGCAGCAGTCTTCTCTGAGGTCACAAGCCACTCCTCAAAACGTGCAAAGTCCTCTAAGAACTTCTGCCACAAACGCCATGTCTCTTCAATCTTGAGCCTTCTCTCCATGGACAAGGCACAGATGCTCCTCCATCGGCGGTCCAGGCTGCGAGTGGCCTGCTGGATAGATTCACACTCTGTGTCCGTGGCACAAGCGTCACAGtcgtgcaacagcacctcacacAGGTTCAACACAGACGCCACACCCGTACTGTGCTTCTCTATGTCACGCTGAAGCTCCtggatagatggagagaaagatggaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1840139 True 983 lncRNA 0.54 5 27229650 27234104
Loading

Neighbor

gene id symbol gene type direction distance location
ccdc170 ccdc170 coding upstream 16520 27189236 ~ 27213130 (+)
zbtb24 zbtb24 coding upstream 80322 27141390 ~ 27149328 (+)
LOC110497587 NA coding upstream 98995 27040261 ~ 27130655 (+)
LOC110497586 LOC106603443 coding upstream 191682 26983440 ~ 27037968 (+)
LOC110498694 LOC106603854 coding upstream 283529 26941566 ~ 26946121 (+)
myct1b myct1 coding downstream 136832 27370936 ~ 27372858 (+)
LOC110497595 LOC107653590 coding downstream 139843 27373947 ~ 27387979 (+)
LOC110497596 LOC106603871 coding downstream 154351 27388455 ~ 27393634 (+)
LOC118941357 NA coding downstream 182528 27416632 ~ 27423405 (+)
LOC110498696 LOC106603637 coding downstream 222894 27456998 ~ 27512089 (+)
G1607452 stx11 non-coding upstream 71149 27154424 ~ 27158501 (+)
G1607401 NA non-coding upstream 131944 27057011 ~ 27097706 (+)
G1607361 NA non-coding upstream 205315 26946138 ~ 27024335 (+)
G1607339 NA non-coding upstream 320139 26908313 ~ 26909511 (+)
G1607617 NA non-coding downstream 162108 27396212 ~ 27396490 (+)
G1607639 NA non-coding downstream 183785 27417889 ~ 27418167 (+)
G1607641 NA non-coding downstream 186660 27420764 ~ 27420986 (+)
G1607643 NA non-coding downstream 190734 27424838 ~ 27425730 (+)
LOC110497557 gcfc2 other upstream 950343 26261361 ~ 26279307 (+)
LOC118941466 NA other upstream 1227112 25973345 ~ 26002713 (+)
G1606716 NA other upstream 1404824 25824484 ~ 25824826 (+)
G1605451 sptlc2 other upstream 2375713 24851175 ~ 24853937 (+)
LOC110497498 LOC106610000 other upstream 4768028 22423424 ~ 22462109 (+)
G1607702 NA other downstream 285859 27519963 ~ 27522078 (+)
G1607901 NA other downstream 630019 27864123 ~ 27864595 (+)
G1609741 NA other downstream 1408229 28642333 ~ 28646521 (+)
cdan1 cdan1 other downstream 1562288 28796261 ~ 28816106 (+)
G1610576 NA other downstream 2126174 29360278 ~ 29360735 (+)

Expression

G1607487(LOC106603506) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.125.
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G1607487(LOC106603506) Expression in each Bioproject

Bar chart with 8 bars.
G1607487(LOC106603506) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.25.
End of interactive chart.

Co-expression Network