G1609062


Basic Information

Item Value
gene id G1609062
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 27384477 ~ 27387965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1841896
ttttattacgtttttGAACATCGGGTGGTAGGCCTATATTTTAATGTATGATATATTATCTGATATATAAACTGGACAAAATAATTGTATAagatttcaaataaaataaaaatccatttaggcaacaaaataatattattttagGTGGTGATGCTGATTCATAATgacccacacacactgtctgtattGATAATAATACGCATTGAAGTATTGCTGTATTACACAGTAGAGTAACAATGCTAAGCATTGAATAGTTGGACGGGGCCAcagtctcccgacccctcctgtctcagcctctagtatttatgctgcagtagtttatgtgtcggggggctagggtcagtctgttatatctggagtatttctcctgtgtcctgtgtgaatttaagtatgctctctctaattctttctttctttctctctcttggaggacctgagccctaggatcatgcctcgggactacctggcctgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttctactgttctacctgcggctatggaaccctgacctgttcccccggacgtgctacctgtcccagacctgctgttttcaactctctagataCAGCAGgcgcggtagagatactctgaatgatcggctatgaacagccaactgacatttactcctgaggtgctgacctgttgcaccctcgacaaccactgtgattattattatttgaccctgctgatcatctttgaacatttgaacatcctggccatgttctgttataatctccacccggcacagccagaagaggactggccacccctcattgcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccgtgcttatttggggttttaggctgggtttctgtacagcactttgagatatcagctgatgtaaagaagggctttagaaatacatttgatttgatttgaatagttgAATCATCACATAACCTGCAGATATACAGTTAACTGCCAAAAGAAGGGAAACACCAACAGAAAGTGTTTAAAAAGGGCGTTGGGTCActacgagccagaacagcttcaatgcaccgtggcatagattctacaagtgtctggaactctattggagggatgcgacaccattcttctgtgagaaattccataatttggttgattgtggtggaaaacgctgtctcaagcACCGCCAAAAATGATGTATATACTAACAATATACATGTATCCCCGCCATAACAATGGGAGTCATTGTCCATAAAGCGTCATGGCGGGCTGTCTAGCTCCCGCCTATCCTTTcgttggattggtggatacatctcacTATTGTAATCGTTTTTAACCTCCTGTATTCAATGGCAAGAGATGCTATGCTATTAGCCTCATGCCATGAATATCCATAtggggtGTTAATTACTTAATTAACTCGGGAACCACACctatgtggaagcacctgctttcaatatacttcgtatccctcatttactcaagtgtttccattattttggaagTTACAGTACTTTCAGATAAAGCAGCATAAGACAAATGTTAATTACTGAATAACATATTCACAAATTAATTAGTCAATCAAATCCAATTAAAAtctgaaaatgtaaaaaatgataACTTGAATGTCTTCAGTACCAAGTGACACACTATTAGCAACAATGCAGACAATATCTATCAAAAGCAGCAGCAGAAACTCCAAGGAGGCAAAGCACTTTACATTCAAATGCAATGTTCAAGTAGCAATCATAACCACACCCAGTGACTAAAACACAGAGCCAACCAAGCTTATACACCATAACATTAAATTAAGGATAGCTTTTCATTTTCTTGCAGGGTTTAACATAAGTTGACGGATCTGGAAGCGGGTGGGATTTCTACTGTATGCATTTCCCCCCAGATACATGAACCATGCATTTGATGATTTTGGTGAATGATTTACACATGCATGACATTTTTTTCATAGGTTCAACCAAATGAAATGATGGGCAGAAAGGTTTGATAACATACATGTTACAATTTAGTTATGAATGTGTTACAATTTATGTCATATGTAGTCCTACAATGACGTTTACATAATGGAAATGTGGATATTTCTAGGTCCTACAAAAACATTTACGGAAAATGATGATATTCCTAGGATCACTTCATAGAAGTGATCTTCGAAATAACATCAAAATAAACTCTATTACTTTCCAACTCATCGCGTTGTCTTTCCACAATCAACATGGTCTCCTCTCtcacaatacattatttcaacATTGTCCAACATTGCACTTACTTTTCTTATGACCATTATAACCTGCAATCTTAGTCACGCATTTTAAAATTGCACATCTCCAAGGGCAGTTTTTAAATCCAATGCATATATACGGTAAGTAAGAGAAACTAAAAAGCTTTGTTGTGAGGCTTACTAAAATGTATCTCATAGCCCTATTATCCGTCTGGTCCAGCACAGAACTACACTGACAGTCCCGTGTTACAGGACACAGTATAATCATCTCTGATTATTCTGTCACTTTGCATCAGAGTACGTTGTAACAGagccatatactgtatatgacacaCATGTCAGCGTTTCTAAactttgtttccattgaacatgccatacaaataaaagGCATTTGAATGAATCCTATTCATTTACCCCACaatctactattgtgtaccttagcagcgcttcccttcctccttttTTTCCGAACACATATGCGACGTTGGGTTAGAGCCAGTGACGTAGTGGTAAAAAAACACAGGTGGGTAAACACTGATCGCCATTTGCGGTGAGTAATGTAATGCTccctatactttcaatgcatttttccGCAAACGGTAGGTAAACACTTGCACAAAatatcctccactacaccactggttaGAGCAGTCTCTTACTTCAGCCTTTGAGTAACATTGGCTAAGGCAACAGCAAAGGCCTGCACTGCTGAGAAAGGATACTGGAAATCCAGGATATATGCGTTCCCATCGATTCTGCCAAACTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1841896 True 3031 lncRNA 0.40 3 27384477 27387965

Neighbor

gene id symbol gene type direction distance location
syne1b LOC106603506 coding downstream 33588 27213284 ~ 27350889 (-)
LOC110497591 LOC106603863 coding downstream 211293 27168907 ~ 27173184 (-)
LOC110497590 stx11 coding downstream 223462 27155132 ~ 27161015 (-)
trnal-uaa-59 NA coding downstream 230777 27153618 ~ 27153700 (-)
LOC110498695 NA coding downstream 245020 27131709 ~ 27139457 (-)
ahi1 ahi1 coding upstream 7885 27395850 ~ 27414739 (-)
LOC110497599 LOC106603601 coding upstream 36861 27424826 ~ 27440075 (-)
LOC110497600 LOC100196682 coding upstream 52935 27440900 ~ 27448264 (-)
trnaa-agc-7 NA coding upstream 124186 27512151 ~ 27512223 (-)
LOC110497601 LOC106603641 coding upstream 124896 27512861 ~ 27522127 (-)
G1609001 NA non-coding downstream 93370 27232291 ~ 27291107 (-)
G1608904 NA non-coding downstream 319000 27063727 ~ 27065477 (-)
G1608863 NA non-coding downstream 346702 27035302 ~ 27037775 (-)
G1608712 NA non-coding downstream 421178 26698692 ~ 26963299 (-)
G1609081 NA non-coding upstream 29977 27417942 ~ 27418188 (-)
G1609082 NA non-coding upstream 30442 27418407 ~ 27418633 (-)
G1609103 NA non-coding upstream 83794 27471759 ~ 27472034 (-)
G1609105 NA non-coding upstream 86044 27474009 ~ 27474405 (-)
G1609106 NA non-coding upstream 86578 27474543 ~ 27474962 (-)
G1608992 NA other downstream 177123 27206230 ~ 27207354 (-)
G1608988 LOC106603498 other downstream 182742 27195748 ~ 27201735 (-)
G1608844 LOC106603413 other downstream 443097 26937870 ~ 26941380 (-)
shprh shprh other downstream 472040 26887874 ~ 26912468 (-)
G1608576 NA other downstream 773494 26584938 ~ 26610983 (-)
nkx2.9 nkx2-8 other upstream 490496 27877963 ~ 27879920 (-)
plekhh1 LOC106602716 other upstream 848631 28205649 ~ 28269202 (-)
crip1 crip1 other upstream 1254323 28642288 ~ 28650251 (-)
mideasb elmsan1 other upstream 1336290 28704168 ~ 28735490 (-)
G1610194 ttbk2 other upstream 1401456 28789421 ~ 28790413 (-)

Expression


Co-expression Network