XLOC_003537


Basic Information

Item Value
gene id XLOC_003537
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30252940 ~ 30253557 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006918
TCAGTGCAGTAGCAGTTGTTTCCTCACTTTTCTGTCCATCATGAAAGCTCCTGGTCTTAAAGGCAAGCGCTGCACGGCATCTCGAAGCTGCATTTCAAAAAACAGAGAACACGCCTCATTCATCTACACGGCCAGACAACAGGTGTGTTTTCCGTCCACAAGTGAAAGGGAGTATTAAAAAGTATCCCTATGTTTATATTAACAACTGAACTAAATGCACAGATGAGTCCGACGGCAGAAAGGCGCGTCCATGAGCCCAGGGGTGTGAGCAGATATTTGCTGCAAAGAGTGGGGTCTGAGGCCGCGCGGCTCTCCTACTTCAGCCGCCACAGGAGCGTTACGCAGAGGGAGATCCTGGAGGCATGGAGCCAGCTAAGAAGCCGCCGCGGGAATACAGCTGCACTGGCTGGAGCTTGAGTCTGGCGTTTTTAAACCACGTTTTAAagtgtattaaattaattttaaatggatgttattatttatttgttgtaataAAGCCATTTTGCTTAACTCGTTTCTTTTCCTGAAGCATGCTAGTTTAATTTCCCCCTCAGGCGAAGCAAGCTCTGTCTGGACATTTTCTTGTAATCGATCTTATTAAACACTAAGTTTATTT
>TCONS_00006919
GTTTCCTCACTTTTCTGTCCATCATGAAAGCTCCTGGTCTTAAAGGCAAGCGCTGCACGGCATCTCGAAGCTGCATTTCAAAAAACAGAGAACACGCCTCATTCATCTACACGGCCAGACAACAGATGAGTCCGACGGCAGAAAGGCGCGTCCATGAGCCCAGGGGTGTGAGCAGATATTTGCTGCAAAGAGTGGGGTCTGAGGCCGCGCGGCTCTCCTACTTCAGCCGCCACAGGAGCGTTACGCAGAGGGAGATCCTGGAGGCATGGAGCCAGCTAAGAAGCCGCCGCGGGAATACAGCTGCACTGGCTGGAGCTTGAGTCTGGCGTTTTTAAACCACGTTTTAAagtgtattaaattaattttaaatggatgttattatttatttgttgtaataAAGCCATTTTGCTTAACTCGTTTCTTTTCCTGAAGCATGCTAGTTTAATTTCCCCCTCAGGCGAAGCAAGCTCTGTCTGGACATTTTCTTGTAATCGATCTTATTAAACACTAAGTTTATTTGA

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0010638 positive regulation of organelle organization biological_process
GO:0006996 organelle organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100936

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006918 False 616 lncRNA 0.45 1 30252940 30253555
TCONS_00006919 True 521 lncRNA 0.47 2 30252957 30253557

Neighbor

gene id symbol gene type direction distance location
XLOC_003536 rs1a coding upstream 842 30244356 ~ 30252098 (+)
XLOC_003535 cdkl5 coding upstream 20807 30161168 ~ 30232133 (+)
XLOC_003534 NA coding upstream 148980 30091155 ~ 30103960 (+)
XLOC_003533 nhsb coding upstream 162921 29999414 ~ 30090019 (+)
XLOC_003532 si:ch73-226l13.2 coding upstream 270968 29975830 ~ 29981972 (+)
XLOC_003538 ppef1 coding downstream 411 30253968 ~ 30280958 (+)
XLOC_003539 si:dkey-163f14.6 coding downstream 28584 30282141 ~ 30294085 (+)
XLOC_003540 ugt1b7 coding downstream 42025 30295582 ~ 30330015 (+)
XLOC_003541 NA coding downstream 45146 30298703 ~ 30300054 (+)
XLOC_003542 tmem178 coding downstream 260099 30513656 ~ 30531106 (+)
XLOC_003369 CR854846.2 misc upstream 14129858 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17540944 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17558677 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17567341 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17572912 12679732 ~ 12680028 (+)
XLOC_003530 NA non-coding upstream 346111 29905248 ~ 29906829 (+)
XLOC_003524 NA non-coding upstream 661744 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 681412 29566746 ~ 29571528 (+)
XLOC_003521 CR450796.1 non-coding upstream 900719 29352101 ~ 29352221 (+)
XLOC_003550 CR855274.1 non-coding downstream 721214 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 794297 31047854 ~ 31055288 (+)
XLOC_003554 NA non-coding downstream 951429 31204986 ~ 31212769 (+)
XLOC_003555 NA non-coding downstream 951926 31205483 ~ 31209887 (+)

Expression


Co-expression Network