Gene
RNA
| Item | Value |
|---|---|
| gene id | G1610185 |
| gene name | ttbk2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 28775693 ~ 28775914 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ttbk2 | Enables kinesin binding activity and protein serine/threonine kinase activity. Involved in several processes, including negative regulation of microtubule binding activity; negative regulation of microtubule depolymerization; and negative regulation of protein localization to microtubule. Located in several cellular components, including ciliary transition zone; cytoskeleton; and cytosol. Implicated in spinocerebellar ataxia type 11. |
| description |
|---|
| unnamed protein product, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1843113 | True | 222 | lncRNA | 0.56 | 1 | 28775693 | 28775914 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tmem62 | tmem62 | coding | downstream | 9490 | 28757259 ~ 28766203 (-) |
| mideasb | elmsan1 | coding | downstream | 40203 | 28704168 ~ 28735490 (-) |
| crip1 | crip1 | coding | downstream | 125442 | 28642288 ~ 28650251 (-) |
| mta1 | mta1 | coding | downstream | 225236 | 28505887 ~ 28550457 (-) |
| tmem229b | LOC106602701 | coding | downstream | 270125 | 28491101 ~ 28505568 (-) |
| LOC110497632 | snap23 | coding | upstream | 159165 | 28935079 ~ 28957730 (-) |
| LOC110497635 | LOC106602575 | coding | upstream | 232901 | 29008815 ~ 29090489 (-) |
| LOC110498568 | NA | coding | upstream | 432910 | 29208824 ~ 29212107 (-) |
| LOC110498326 | LOC106602473 | coding | upstream | 941148 | 29717062 ~ 29729253 (-) |
| si:dkey-288a3.2 | LOC106601776 | coding | upstream | 2171539 | 30911393 ~ 30988951 (-) |
| G1610183 | NA | non-coding | downstream | 4234 | 28770852 ~ 28771459 (-) |
| G1610181 | NA | non-coding | downstream | 8486 | 28766929 ~ 28767207 (-) |
| G1610160 | NA | non-coding | downstream | 19414 | 28756003 ~ 28756279 (-) |
| G1610161 | NA | non-coding | downstream | 19892 | 28755564 ~ 28755801 (-) |
| G1610156 | NA | non-coding | downstream | 20336 | 28754625 ~ 28755357 (-) |
| G1610189 | ttbk2 | non-coding | upstream | 6706 | 28782620 ~ 28782837 (-) |
| G1610190 | NA | non-coding | upstream | 7393 | 28783307 ~ 28783532 (-) |
| G1610191 | ttbk2 | non-coding | upstream | 8387 | 28784301 ~ 28784877 (-) |
| G1610192 | NA | non-coding | upstream | 11442 | 28787356 ~ 28787639 (-) |
| G1610193 | NA | non-coding | upstream | 14808 | 28790722 ~ 28793590 (-) |
| plekhh1 | LOC106602716 | other | downstream | 506548 | 28205649 ~ 28269202 (-) |
| nkx2.9 | nkx2-8 | other | downstream | 896877 | 27877963 ~ 27879920 (-) |
| G1608992 | NA | other | downstream | 1568339 | 27206230 ~ 27207354 (-) |
| G1610194 | ttbk2 | other | upstream | 13507 | 28789421 ~ 28790413 (-) |
| G1611350 | NA | other | upstream | 1110431 | 29886345 ~ 29886690 (-) |
| G1611392 | NA | other | upstream | 1171486 | 29947400 ~ 29955786 (-) |
| G1611431 | LOC106602420 | other | upstream | 1259004 | 30034918 ~ 30035682 (-) |
| G1613218 | NA | other | upstream | 2687207 | 31463121 ~ 31463896 (-) |
