XLOC_003538 (ppef1)


Basic Information

Item Value
gene id XLOC_003538
gene name ppef1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30253968 ~ 30280958 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006920
AGACTGTGCTTTGAACTGAAAGCTTTACCTCATCTGACATCTGTGGCGTTTATGTTCGCACTCCTCCACATTTGGAAATACGTGCTAGATGTTTTGTGCTCTGGGTTTTGTCCAACACTAATTTCTTCACGGAGTCGCGTGTCGTGAGATTGATCACTGTTAAAAGGGCCTTTTGAAAGGCTCTTTAGAGGCACAGATTAAAGTCCAGCATGATTTGCACATTTCTGGATACCAAGTGATAAAGAGAATCCCTAAAATTTGGGAGATTCATGACTACAGGCAAGCGGTAGGATCATGGGATGCGGCACATCCATTGCCATTGAGAACCAAACACGACCCTCAGAAacagCCATAAAAGCTGCCATACTGATCCAGCGTTGGTACAGACGCTATGTTGCTCACCTGGAGATGCGAAGACGCTACACGTGGAACATCTTTCAGTCCATTGAGTATGCAGGAGAACAGGACCAGCTACAGCTCTCAAGTTTCTTCACTTTCATGTTGGACAACTTCACTCAGATTAATGGGAATGGACCAgACTTGATCTCCCACCTGCTGGACTCTGTGGTTGATCCTCTGACGGAGGAGGTCAGGCAGCTGAAGTACGAGCAGATTATGGTGCCGGAGTCGTACAGCGGCCCTCGTCTCTCCTTCCCGCTGAGCGTGACTGATACCAATGCCCTGCTCAGTGCCTTTAAAGAGGAGCAGACTCTTCATGGGAAGTATGTGCTGCAGTTACTGTATGAAACCAAGAAGTTCCTGAAACAAATGCCAAACGTCATTTATCTGTCAACGTCCTATGCCAAAGAAATAACGATCTGTGGCGATCTGCATGGAAGACTGGATGACTTGCTGCTTATATTTTACAAGAACGGTCTGCCCTCTGCGGAAAACCCCTACATATTCAATGGAGACTTTGTGGATCGAGGAAAGAAATCTACAGAGATTATCATCATTCTCTTTGCCTTCGTTTTGCTCTACCCCGACCACATGCATCTGAACAGGGGAAACCATGAGGACCACATCATGAACCTCAGATATGGATTCACCAGAGAAGTCATGCAGAAGTACAAGACTCATGGCAGGGAAATCCTGCAGCTCCTTCAGGATGTGTTCAGTCTTCTTCCTGTTGCAACTGTAATAGACAACAAAGTGCTTATTGTTCATGGTGGCATATCGGACAAAACTGATCTGGACTTTCTGAGCACTGTTGAAAGGCATAAAGTGAAGTCAGCTCTGCGTTTGCCGAAGCGCAGCACTGATCATCTGACGGTGCGCTCGTGCAGTCGCAGCAGCAGCAGAAACAGGGGCAGAAACAGCAGATCCTCAAGCCGACACTCGTCCCGCAGCAGAAGGAAGAAGCTCAGCAAGCAGGGCAgccgctcctcctcttcctcatcctcctcatcctcctcttcctccatGTGTTCGCCACGGGTCTCAGCCAAAAACACTCCACGCCGCCCTCCACCGAGCCCCACAGACATGCTCCAAGTGCCCTTTCTGGACTCATTCGTGTCCTTGGAGCCACCAGAGCTGCCCAGAGAAGAGCTGGAGTGGCAGCAGGTTGTGGATATCCTGTGGAGTGACCCTAAACATCAGAATGGCTGCAGTCCCAATTCTTTTCGCGGTGGAGGCTGTTACTTCGGGCCAGACGTGACACAGACACTGCTGCAGAAACACGGCCTCTGTCTGCTCATCAGATCACACGAATGCAAACAGGAGGGCTATGAGCTTTGCCACAATGGACAGgttatcactaTATTCTCTGCATCAAACTACTATGAAGAGGGCAGTAACCGTGGGGCTTATGTCAAACTGGGGCCTGAACTTGTCCCTCGCTTCTTCCAGTATCAAGTCAGTCGAAGCACCAGAAAACTCACCCTCCATCAGAGGGTTCGAGTAGCTGAAGGTTCTGCACTCAGGGCTCTGAAAGAGAAACTTTATGCTCATCGCTCTGAACTCATGGCTGCCTTTCAACAGTATGACATCAATAACACagGCCGTATCTCCACTAGTGAGTGGGCACAGGTGGTGGAGTCTGTTCTGCGTTTGGATCTGCCATGGAGAACCCTGCGCCCACGCCTGGCCCGTCTTGGCACAGATGGCAATGTGGAATATGAATCCTGTTTCGAGGACATCAGTCCTGGAGAGCCCATCCCTCCGgTGACCCCGAACTTAGCTGAAACACTTTATAGATATAGAACTGACCTGGAGATCATTTTTAACATCATCGATAAGGATCACTCAGGTCAGATCTCCATCGAGGAGTTTCGTCAGACCTGGAAGCTCTTCAGCTCTCATTTAGGGGTGGCTGTGAATGACCAGACCATAGACGACATGGCTCGAAGCATAGACTTTAACAAAGACGGCAGCATTGATTTTACTGAGTTCCTGGAGGCCTTCAGGGTGGTGCATAAACTGGATGTCAAAGAGCAACAGCAGGGTTAATTCTGGATCACAGACAACACAGATTTACTTtaactttagtttttttaacaACTTTCGGACTCCAAATACATCATTTATACATCATTACACAGGTTTTCATTTCTTTCATAAAGGTAAGTGGTTTCACTCTTTTTTGTGATATAATTAACTGAAGACGGGTTAAAgaaaatgttcaaataaattaaattaaaaataaattaaaaagtcgGTCACGACTATTGTGTTGCACTGTAATTCACAAGTGCGGTTTAATTGTTTGGCAGTACGTAAGCCCATAATTGTGACTTCACTTTGAGTCATGAGTCACttctgttgttgatttttttttctgatatgaGCTttgttcttgtgtgtgttttacaaCATAGCATCTATTATTATCAAACCTAAAACGTCAATTCGAGCTTTTGTAAGACAAGATTTCACATTTAAGGCTTAAAAATTGAAGGGAGATTAAAacagtaaacacacactcacacacacccaaAAACATTGACTACTTTGTTTTTCATATTTGGTCTCTGGGATTAAGATTGCGAGTAATGCCACATTTAAATTGGATACTAAACCCactgtattacttttttttttttttttttgacacttaCTGACACTTATTATTTAACTGAAAACCATTTTTGTCAATTATCATGCAATATCCCAACTTAGGAAATTCGAAAGGATGGTCTGCTTTAACTCAACAtgtaaaaatatctaataaatactgtaaatgtaatCTCT
>TCONS_00006921
AGACTGTGCTTTGAACTGAAAGCTTTACCTCATCTGACATCTGTGGCGTTTATGTTCGCACTCCTCCACATTTGGAAATACGTGCTAGATGTTTTGTGCTCTGGGTTTTGTCCAACACTAATTTCTTCACGGAGTCGCGTGTCGTGAGATTGATCACTGTTAAAAGGGCCTTTTGAAAGGCTCTTTAGAGGCACAGATTAAAGTCCAGCATGATTTGCACATTTCTGGATACCAAGTGATAAAGAGAATCCCTAAAATTTGGGAGATTCATGACTACAGGCAAGCGGTAGGATCATGGGATGCGGCACATCCATTGCCATTGAGAACCAAACACGACCCTCAGAAacagCCATAAAAGCTGCCATACTGATCCAGCGTTGGTACAGACGCTATGTTGCTCACCTGGAGATGCGAAGACGCTACACGTGGAACATCTTTCAGTCCATTGAGTATGCAGGAGAACAGGACCAGCTACAGCTCTCAAGTTTCTTCACTTTCATGTTGGACAACTTCACTCAGATTAATGGGAATGGACCAgACTTGATCTCCCACCTGCTGGACTCTGTGGTTGATCCTCTGACGGAGGAGGTCAGGCAGCTGAAGTACGAGCAGATTATGGTGCCGGAGTCGTACAGCGGCCCTCGTCTCTCCTTCCCGCTGAGCGTGACTGATACCAATGCCCTGCTCAGTGCCTTTAAAGAGGAGCAGACTCTTCATGGGAAGTATGTGCTGCAGTTACTGTATGAAACCAAGAAGTTCCTGAAACAAATGCCAAACGTCATTTATCTGTCAACGTCCTATGCCAAAGAAATAACGATCTGTGGCGATCTGCATGGAAGACTGGATGACTTGCTGCTTATATTTTACAAGAACGGTCTGCCCTCTGCGGAAAACCCCTACATATTCAATGGAGACTTTGTGGATCGAGGAAAGAAATCTACAGAGATTATCATCATTCTCTTTGCCTTCGTTTTGCTCTACCCCGACCACATGCATCTGAACAGGGGAAACCATGAGGACCACATCATGAACCTCAGATATGGATTCACCAGAGAAGTCATGCAGAAGTACAAGACTCATGGCAGGGAAATCCTGCAGCTCCTTCAGGATGTGTTCAGTCTTCTTCCTGTTGCAACTGTAATAGACAACAAAGTGCTTATTGTTCATGGTGGCATATCGGACAAAACTGATCTGGACTTTCTGAGCACTGTTGAAAGGCATAAAGTGAAGTCAGCTCTGCGTTTGCCGAAGCGCAGCACTGATCATCTGACGGTGCGCTCGTGCAGTCGCAGCAGCAGCAGAAACAGGGGCAGAAACAGCAGATCCTCAAGCCGACACTCGTCCCGCAGCAGAAGGAAGAAGCTCAGCAAGCAGGGCAgccgctcctcctcttcctcatcctcctcatcctcctcttcctccatGTGTTCGCCACGGGTCTCAGCCAAAAACACTCCACGCCGCCCTCCACCGAGCCCCACAGACATGCTCCAAGTGCCCTTTCTGGACTCATTCGTGTCCTTGGAGCCACCAGAGCTGCCCAGAGAAGAGCTGGAGTGGCAGCAGGTTGTGGATATCCTGTGGAGTGACCCTAAACATCAGAATGGCTGCAGTCCCAATTCTTTTCGCGGTGGAGGCTGTTACTTCGGGCCAGACGTGACACAGACACTGCTGCAGAAACACGGCCTCTGTCTGCTCATCAGATCACACGAATGCAAACAGGAGGGCTATGAGCTTTGCCACAATGGACAGgttatcactaTATTCTCTGCATCAAACTACTATGAAGAGGGCAGTAACCGTGGGGCTTATGTCAAACTGGGGCCTGAACTTGTCCCTCGCTTCTTCCAGTATCAAGTCAGTCGAAGCACCAGAAAACTCACCCTCCATCAGAGGGTTCGAGTAGCTGAAGGTTCTGCACTCAGGGCTCTGAAAGAGAAACTTTATGCTCATCGCTCTGAACTCATGGCTGCCTTTCAACAGTATGACATCAATAACACagGCCGTATCTCCACTAGTGAGTGGGCACAGGTGGTGGAGTCTGTTCTGCGTTTGGATCTGCCATGGAGAACCCTGCGCCCACGCCTGGCCCGTCTTGGCACAGATGGCAATGTGGAATATGAATCCTGTTTCGAGGACATCAGTCCTGGAGAGCCCATCCCTCCGgTGACCCCGAACTTAGCTGAAACACTTTATAGATATAGAACTGACCTGGAGATCATTTTTAACATCATCGATAAGGATCACTCAGGTCAGATCTCCATCGAGGAGTTTCGTCAGACCTGGAAGCTCTTCAGCTCTCATTTAGGGGTGGCTGTGAATGACCAGACCATAGACGACATGGCTCGAAGCATAGACTTTAACAAAGACGGCAGCATTGATTTTACTGAGTTCCTGGAGGCCTTCAGGGTGGTGCATAAACTGGATGTCAAAGAGCAACAGCAGGGTTAATTCTGGATCACAGACAACACAGATTTACTTtaactttagtttttttaacaACTTTCGGACTCCAAATACATCATTTATACATCATTACACAGGTTTTCATTTCTTTCATAAAGGTAAGTGGTTTCACTCTTTTTTGTGATATAATTAACTGAAGACGGGTTAAAgaaaatgttcaaataaattaaattaaaaataaattaaaaagtcgGTCACGACTATTGTGTTGCACTGTAATTCACAAGTGCGGTTTAATTGTTTGGCAGTACGTAAGCCCATAATTGTGACTTCACTTTGAGTCATGAGTCACttctgttgttgatttttttttctgatatgaGCTttgttcttgtgtgtgttttacaaCATAGCATCTATTATTATCAAACCTAAAACGTCAATTCGAGCTTTTGTAAGACAAGATTTCACATTTAAGGCTTAAAAATTGAAGGGAGATTAAAacagtaaacacacactcacacacacccaaAAACATTGACTACTTTGTTTTTCATATTTGGTCTCTGGGATTAAGATTGCGAGTAATGCCACATTTAAATTGGATACTAAACCCactgtattacttttttttttttttttttgacacttaCTGACACTTATTATTTAACTGAAAACCATTTTTGTCAATTATCATGCAATATCCCAACAtgtaaaaatatctaataaatactgtaaatgtaatCTCTAAATGTTACTGTATTTAACGTCCTAACACACTGTGTATAAATTATTTCAATGTAAATGTATACATGTATCGTATTACTTTGTCTACATTATTGCTATCAtt
>TCONS_00006922
AGATTGATCACTGTTAAAAGGGCCTTTTGAAAGGCTCTTTAGAGGCACAGATTAAAGTCCAGCATGATTTGCACATTTCTGGATACCAAGTGATAAAGAGAATCCCTAAAATTTGGGAGATTCATGACTACAGGCAAGCGGTAGGATCATGGGATGCGGCACATCCATTGCCATTGAGAACCAAACACGACCCTCAGAAacagATGGCTCCATCAAGCAGTCCAACCCAGCTCTGACCATAAAAGCTGCCATACTGATCCAGCGTTGGTACAGACGCTATGTTGCTCACCTGGAGATGCGAAGACGCTACACGTGGAACATCTTTCAGTCCATTGAGTATGCAGGAGAACAGGACCAGCTACAGCTCTCAAGTTTCTTCACTTTCATGTTGGACAACTTCACTCAGATTAATGGGAATGGACCAgACTTGATCTCCCACCTGCTGGACTCTGTGGTTGATCCTCTGACGGAGGAGGTCAGGCAGCTGAAGTACGAGCAGATTATGGTGCCGGAGTCGTACAGCGGCCCTCGTCTCTCCTTCCCGCTGAGCGTGACTGATACCAATGCCCTGCTCAGTGCCTTTAAAGAGGAGCAGACTCTTCATGGGAAGTATGTGCTGCAGTTACTGTATGAAACCAAGAAGTTCCTGAAACAAATGCCAAACGTCATTTATCTGTCAACGTCCTATGCCAAAGAAATAACGATCTGTGGCGATCTGCATGGAAGACTGGATGACTTGCTGCTTATATTTTACAAGAACGGTCTGCCCTCTGCGGAAAACCCCTACATATTCAATGGAGACTTTGTGGATCGAGGAAAGAAATCTACAGAGATTATCATCATTCTCTTTGCCTTCGTTTTGCTCTACCCCGACCACATGCATCTGAACAGGGGAAACCATGAGGACCACATCATGAACCTCAGATATGGATTCACCAGAGAAGTCATGCAGAAGTACAAGACTCATGGCAGGGAAATCCTGCAGCTCCTTCAGGATGTGTTCAGTCTTCTTCCTGTTGCAACTGTAATAGACAACAAAGTGCTTATTGTTCATGGTGGCATATCGGACAAAACTGATCTGGACTTTCTGAGCACTGTTGAAAGGCATAAAGTGAAGTCAGCTCTGCGTTTGCCGAAGCGCAGCACTGATCATCTGACGGTGCGCTCGTGCAGTCGCAGCAGCAGCAGAAACAGGGGCAGAAACAGCAGATCCTCAAGCCGACACTCGTCCCGCAGCAGAAGGAAGAAGCTCAGCAAGCAGGGCAgccgctcctcctcttcctcatcctcctcatcctcctcttcctccatGTGTTCGCCACGGGTCTCAGCCAAAAACACTCCACGCCGCCCTCCACCGAGCCCCACAGACATGCTCCAAGTGCCCTTTCTGGACTCATTCGTGTCCTTGGAGCCACCAGAGCTGCCCAGAGAAGAGCTGGAGTGGCAGCAGGTTGTGGATATCCTGTGGAGTGACCCTAAACATCAGAATGGCTGCAGTCCCAATTCTTTTCGCGGTGGAGGCTGTTACTTCGGGCCAGACGTGACACAGACACTGCTGCAGAAACACGGCCTCTGTCTGCTCATCAGATCACACGAATGCAAACAGGAGGGCTATGAGCTTTGCCACAATGGACAGgttatcactaTATTCTCTGCATCAAACTACTATGAAGAGGGCAGTAACCGTGGGGCTTATGTCAAACTGGGGCCTGAACTTGTCCCTCGCTTCTTCCAGTATCAAGTCAGTCGAAGCACCAGAAAACTCACCCTCCATCAGAGGGTTCGAGTAGCTGAAGGTTCTGCACTCAGGGCTCTGAAAGAGAAACTTTATGCTCATCGCTCTGAACTCATGGCTGCCTTTCAACAGTATGACATCAATAACACagGCCGTATCTCCACTAGTGAGTGGGCACAGGTGGTGGAGTCTGTTCTGCGTTTGGATCTGCCATGGAGAACCCTGCGCCCACGCCTGGCCCGTCTTGGCACAGATGGCAATGTGGAATATGAATCCTGTTTCGAGGACATCAGTCCTGGAGAGCCCATCCCTCCGgTGACCCCGAACTTAGCTGAAACACTTTATAGATATAGAACTGACCTGGAGATCATTTTTAACATCATCGATAAGGATCACTCAGGTCAGATCTCCATCGAGGAGTTTCGTCAGACCTGGAAGCTCTTCAGCTCTCATTTAGGGGTGGCTGTGAATGACCAGACCATAGACGACATGGCTCGAAGCATAGACTTTAACAAAGACGGCAGCATTGATTTTACTGAGTTCCTGGAGGCCTTCAGGGTGGTGCATAAACTGGATGTCAAAGAGCAACAGCAGGGTTAA

Function

symbol description
ppef1 Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within detection of stimulus involved in sensory perception. Predicted to be active in cytosol and nucleus. Orthologous to human PPEF1 (protein phosphatase with EF-hand domain 1).

GO:

id name namespace
GO:0050906 detection of stimulus involved in sensory perception biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030145 manganese ion binding molecular_function
GO:0005506 iron ion binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080303-27 Predicted to enable protein serine/threonine phosphatase activity. Predicted to act upstream of or within detection of stimulus involved in sensory perception. Predicted to be active in cytosol and nucleus. Orthologous to human PPEF1 (protein phosphatase with EF-hand domain 1).

Ensembl:

ensembl_id ENSDARG00000020191

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006920 False 3192 mRNA 0.45 18 30253968 30280857
TCONS_00006921 False 3256 mRNA 0.44 19 30253968 30280958
TCONS_00006922 True 2338 mRNA 0.50 18 30254556 30280116

Neighbor

gene id symbol gene type direction distance location
XLOC_003537 NA coding upstream 411 30252940 ~ 30253557 (+)
XLOC_003536 rs1a coding upstream 1870 30244356 ~ 30252098 (+)
XLOC_003535 cdkl5 coding upstream 21835 30161168 ~ 30232133 (+)
XLOC_003534 NA coding upstream 150008 30091155 ~ 30103960 (+)
XLOC_003533 nhsb coding upstream 163949 29999414 ~ 30090019 (+)
XLOC_003539 si:dkey-163f14.6 coding downstream 1183 30282141 ~ 30294085 (+)
XLOC_003540 ugt1b7 coding downstream 14624 30295582 ~ 30330015 (+)
XLOC_003541 NA coding downstream 17745 30298703 ~ 30300054 (+)
XLOC_003542 tmem178 coding downstream 232698 30513656 ~ 30531106 (+)
XLOC_003543 CR556713.1 coding downstream 333527 30614485 ~ 30636146 (+)
XLOC_003369 CR854846.2 misc upstream 14130886 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17541972 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17559705 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17568369 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17573940 12679732 ~ 12680028 (+)
XLOC_003530 NA non-coding upstream 347139 29905248 ~ 29906829 (+)
XLOC_003524 NA non-coding upstream 662772 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 682440 29566746 ~ 29571528 (+)
XLOC_003550 CR855274.1 non-coding downstream 693813 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 766896 31047854 ~ 31055288 (+)
XLOC_003554 NA non-coding downstream 924028 31204986 ~ 31212769 (+)
XLOC_003555 NA non-coding downstream 924525 31205483 ~ 31209887 (+)

Expression


Co-expression Network