G1611006 (LOC106602554)


Basic Information

Item Value
gene id G1611006
gene name LOC106602554
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 29386657 ~ 29388644 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1844012
GGGGTGCCTAAAGCCCAGTTTGGCGGTGGTGTCCTGGATCTCCTTCTCCAGCCAGGCCTGGGGCCGGATCAGGTACTTGACAAACTGAGACACCCACCAGACGGAAGGGTCACCATGGAGCCGGTGGAGGCGCTGGGCCAGGTCCTCGGGAATGGCCAGGGGCAGGTAGGGGGGGCGGGGGTGCAGGCTGTCCACGATGGGTAACTCTACCACCTGGACGTCTTTGTCGTTAGCCTCGCctgcgggagagagagggaggagcgagGGCTAATAAAAAGAGTGGACGGAACGGCAGAAAGGGAGAAGgcaagagaccgagagagagagagagctggagagggagaaggcaagagaccgagagagaaagacggagagggagaaggcaagagaccgagagagagagagagagagagagagccggagagggagaaggcaagagaccgagagagagagagagccagagagggagaaggcaagagacagagagagagagagagagccggagagggagaaggcaagagacagagagagagagagagagagagagagccggagagggagaaggcaagagaccgagagagagagagagagagagagagagagagagccggagAGGAAGAAGgcaagagactgagagagagagagagagctggagagggagaaggcaagagaccgagagagagagacggagagggagaaggcaagagaccgagagagccggagagggagaaggcaagagaccgagagagagagccggagagggagagataggaggtaACAATAGAGTGCTtttgacatacagacagagagagatataaatgATCAGATCTCCAGCCTCCAGCAGAGGGGTTTGATGCATGTAGCAGTGAAGATGCACTAAGCATCATGGTGTACATGAGGAGCTGTCTGAACAGCAGAACCCAGGGAGAAGagttcctcttccctctctctctctctcgctggttcTGCCTGTATCCCCCCAGGACACCCTGTCTTATAGTTCTTATTATTAAGACACAAGACAAAGGTATtttgtggcctgtgagtggttaGTTAAAGTGCTATTGCACTCCTTGACCCTTCCTCTCAGATGTTTTGGAGTGCTGTTGATTCTCTGATAGAGAGTAACAATTAGTGTCACGTGCCTCAAGGACAGTTTTAATGAACATTTATCAAAATAAGATATGAACGAATGGGACATTCCCacggaggaaaggaaaggaagagagaggaagggagagtgaagaaggggtagagagatccttgaattctctctctctctctttattaaaaaataaaataaaaagcacaCAATGAAAATAAGAAATGTAGATTTGAATGAACTGGAATATTTCACCAAACAAAACCAGTAAAGACAGTCAAAGCTCTAATCACCATTTTTCAATAtatcaaataaatacaaataatcaTCAAGCTAagaatacagctagagagaaacaaacagactGCATCTGCACACCAGTGTCCAGAATTTAAATCTTGCGCTGCATTAAATATTAAAAggcaattttttttttctctctcttctcactgaAATAAGTATTTAGGAAATT

Function

NR:

description
alpha-(1,6)-fucosyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1844012 True 1574 lncRNA 0.49 2 29386657 29388644

Neighbor

gene id symbol gene type direction distance location
LOC110498568 NA coding downstream 174550 29208824 ~ 29212107 (-)
LOC110497635 LOC106602575 coding downstream 296168 29008815 ~ 29090489 (-)
LOC110497632 snap23 coding downstream 428927 28935079 ~ 28957730 (-)
tmem62 tmem62 coding downstream 620454 28757259 ~ 28766203 (-)
mideasb elmsan1 coding downstream 651167 28704168 ~ 28735490 (-)
LOC110498326 LOC106602473 coding upstream 328418 29717062 ~ 29729253 (-)
si:dkey-288a3.2 LOC106601776 coding upstream 1558809 30911393 ~ 30988951 (-)
bcl11ba LOC106601761 coding upstream 2178709 31567353 ~ 31629055 (-)
setd3 LOC106602337 coding upstream 2265018 31653662 ~ 31717607 (-)
ccdc85ca LOC106602325 coding upstream 2344368 31730827 ~ 31790808 (-)
G1611008 NA non-coding downstream 4172 29381961 ~ 29382485 (-)
G1610954 NA non-coding downstream 77245 29304103 ~ 29309412 (-)
G1610443 NA non-coding downstream 221195 29165261 ~ 29165462 (-)
G1610417 NA non-coding downstream 234068 29152367 ~ 29152589 (-)
G1610414 NA non-coding downstream 235649 29150807 ~ 29151008 (-)
G1611117 NA non-coding upstream 135562 29524206 ~ 29524632 (-)
G1611175 LOC106608213 non-coding upstream 215125 29603769 ~ 29604969 (-)
G1611176 LOC107657705 non-coding upstream 220509 29609153 ~ 29613423 (-)
G1611209 NA non-coding upstream 274641 29663285 ~ 29663516 (-)
G1611215 NA non-coding upstream 288182 29676826 ~ 29691712 (-)
G1610194 ttbk2 other downstream 596244 28789421 ~ 28790413 (-)
crip1 crip1 other downstream 736593 28642288 ~ 28650251 (-)
plekhh1 LOC106602716 other downstream 1117512 28205649 ~ 28269202 (-)
nkx2.9 nkx2-8 other downstream 1507841 27877963 ~ 27879920 (-)
G1611350 NA other upstream 497701 29886345 ~ 29886690 (-)
G1611392 NA other upstream 558756 29947400 ~ 29955786 (-)
G1611431 LOC106602420 other upstream 646274 30034918 ~ 30035682 (-)
G1613218 NA other upstream 2074477 31463121 ~ 31463896 (-)
G1613722 hipl1 other upstream 2331278 31719922 ~ 31807247 (-)

Expression


Co-expression Network