G1611176 (LOC107657705)


Basic Information

Item Value
gene id G1611176
gene name LOC107657705
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 29609153 ~ 29613423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1844197
ttcatcagCTTCATCAATATTGTTACAGAATTTTTATAGTACAGAGTTCAATATCTCCTCATTGCTTCATTAATTTCTTTAGGAGTGCTGGTCACCATAATATCTGTACAATATcactcttttttatttatttatttttctgtacACTGTTTTAATAGTTGTTAAAAAGGCAGTCAGCACTTTAAATAAGCTGTTTCTTCCTTCTgaaattaaacaaataaaataaagttCTCTCCCTACCCCAGTTCCCTCACCTATCTGTACTAGTGTGTGTGAGGTGAGCAGTCCTGGAGGGGTGTGGGTGGGGGAGAGCGGGGTGTTGGTAGAGTAGAAGGGCAGGGGACAGGGTGGGACCAGAGCCAGGATATACGTATCTCTGGGTGGGACTTTAGTACCAGGTGAGGTTAGACTGACGAAGCGGGGCCGCTGCCTTCCTCCACCTTTAAGGCATGTATTCATAAaggggtaggagtgctgatctaggatcagtttagtttTATATATCATAATTAATAAGATTATATAGACCGGGGGGAACTGGGCCTGCATCCACAAAGCATCtaaaataaaaatcaaatcaaagttaatttgtcgcatacacagattagcagatgttaaagcaGGTGAGGCGAAATGCTAAGAATCCCAGAGCaggagttctgatctaggatctgttttgtatttcagatcatcatgaataagattatatggacagatcctagatcaggacTTCTAcactgagatgctttgtggatacgggccctgaTCGTTGATCAGCACTCTTACTCAGAGCCACTTTATAAATACAGACCCAGTTCTCGTCATGATGCCCGACACTTTTGGCACTGCGCACATAAACACGACTCACAAGATAAACGACAAGCAAAGCTGTGTGAAGCCATTATGAAGCATAATGAAGCCCATATAATGTGGCATAGAAGAGAAGAATACTAAAGGGAGGTAAAGATAGCTGTCACCTAAAGGCACCCTCAGGACCCTGAAAGCACTCCTCCTATCAAGCCAGAGCACCAAGGTTACATCCTGATTCTCCACTCTTTTCCTGTTTTCTTTCTTGCATGGATTTAGCAATGGTGGAAACTACCTCCAGCCAATGCCTACACCAAACCCATGCATTTAAATGACTGGGAGTGTGCAAATGCACACTTTAGGAGAAGGGTGGATAATCAGAACATAGGGACTTCTGACAATCTCAAAAGGGTTTTCGTTGTAAAAAAGAAGATGTATTTTGAACCTTTTTGTGAGATAAGAAAATAGGCTTTCTTTTTTAATCCTGTTAAGCACCTACAGCTTCCTATTGAAATGCTACTGCTATCTATCTATAAGGTCTAGGGTTGAACACGCAAAGCAATTGCAAGGATGAAAGAGAAACAAGAGTTGCTTAATAtgataatataatattaataattATCATAATAATCATGAtacttataataataatataatatattacagaATAATTCTcttatgttttatatattttttccctcCACTTTTTAGGTATTACATTTTGTCTTTGAAATACAATGATCTTTTCAAATTAATATTTTCATGATCAATGTATGTACTCATTTATTTTGTGTTCGTGATTAATTATACTtgatcaactttattatccaaatCAATAAAAACTAGCTGTGCCGTTACATATTACAGAATAGTTATGATATGTGGACATGCAccacttcctcttcctgtctatctatctgtcccTGTAAGATGACATCATCATAGCCGTCCTATGACCATCACATCCACAACCTCTCCTTTATGCAGCTCCACGTATTGCTCTGTTTTAGGAGGCAACATCAGCAGCCCGTTGGCACTTCTCATGCTCATCAATCGACTACTCATCTGATTTCCTGTGCTCTGTGCCCATGGCAGAGGCTCCTGGTGGTGCCATGTCAGGATGCAGCGGTGGTACTCTGGACGAGGGTCCAACTTTACATCGCAGGACAGCCTGGCTTTGATGATGGTGGGTCGAGGGTCCAGGATCCCCTGCATCTTCCTCAGAGCAGGGATGACAAAGAGGTTACAGGTGACGACAGCAGACACTGGGTTACctgaccaacagagagagaggtgctgaggatgagagggagacaaGGACGGGACATTACCACTGTTCAGGGCTGAGGAGGGAGACGGCAGGATAGGCCTGGGAAGGTTTGGACGGGTTGGGGTTGAGGAgcattgttgttgttgacatgctCCAGCTAGTAGCCCCTGTAGGACAGGACAAGGGCTCAGTGCATAGGGGAGTGGTTTTCTTCACCCCACTGGCCTGTCTGTATGCGACCCAGGCTGCGGTTGTGGACCTGGGCTGGggctggagggatggggaggcagacaggtgaGACATGTACGCTTCTGCCTTTGAAAGTGTTCACAGAGGAGGGACTGGTGGGTGAGAGCTCTTTGGGGAGAGTGGGACAAGTTTGTGAGTGCTGTTTCTTTACACCAACAAGCAGAGGTGAGGGGTAGCAATAGCAGGTGGAGAGGGTGAGCGGCGCTCTCAAATCACAACAACAAGCAACAGCATGGAATCATGGGATAGATACTCACAGGGGCAGGGG

Function

NR:

description
PREDICTED: gephyrin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1844197 True 2594 lncRNA 0.43 3 29609153 29613423

Neighbor

gene id symbol gene type direction distance location
LOC110498568 NA coding downstream 397046 29208824 ~ 29212107 (-)
LOC110497635 LOC106602575 coding downstream 518664 29008815 ~ 29090489 (-)
LOC110497632 snap23 coding downstream 651423 28935079 ~ 28957730 (-)
tmem62 tmem62 coding downstream 842950 28757259 ~ 28766203 (-)
mideasb elmsan1 coding downstream 873663 28704168 ~ 28735490 (-)
LOC110498326 LOC106602473 coding upstream 103639 29717062 ~ 29729253 (-)
si:dkey-288a3.2 LOC106601776 coding upstream 1334030 30911393 ~ 30988951 (-)
bcl11ba LOC106601761 coding upstream 1953930 31567353 ~ 31629055 (-)
setd3 LOC106602337 coding upstream 2040239 31653662 ~ 31717607 (-)
ccdc85ca LOC106602325 coding upstream 2119589 31730827 ~ 31790808 (-)
G1611175 LOC106608213 non-coding downstream 4184 29603769 ~ 29604969 (-)
G1611117 NA non-coding downstream 84521 29524206 ~ 29524632 (-)
G1611006 LOC106602554 non-coding downstream 220509 29386657 ~ 29388644 (-)
G1611008 NA non-coding downstream 226668 29381961 ~ 29382485 (-)
G1610954 NA non-coding downstream 299741 29304103 ~ 29309412 (-)
G1611209 NA non-coding upstream 49862 29663285 ~ 29663516 (-)
G1611215 NA non-coding upstream 63403 29676826 ~ 29691712 (-)
G1611237 NA non-coding upstream 89533 29702956 ~ 29703169 (-)
G1611343 NA non-coding upstream 261323 29874746 ~ 29874978 (-)
G1611345 NA non-coding upstream 261984 29875407 ~ 29875680 (-)
G1610194 ttbk2 other downstream 818740 28789421 ~ 28790413 (-)
crip1 crip1 other downstream 959089 28642288 ~ 28650251 (-)
plekhh1 LOC106602716 other downstream 1340008 28205649 ~ 28269202 (-)
nkx2.9 nkx2-8 other downstream 1730337 27877963 ~ 27879920 (-)
G1611350 NA other upstream 272922 29886345 ~ 29886690 (-)
G1611392 NA other upstream 333977 29947400 ~ 29955786 (-)
G1611431 LOC106602420 other upstream 421495 30034918 ~ 30035682 (-)
G1613218 NA other upstream 1849698 31463121 ~ 31463896 (-)
G1613722 hipl1 other upstream 2106499 31719922 ~ 31807247 (-)

Expression


Co-expression Network