G1611438


Basic Information

Item Value
gene id G1611438
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30043893 ~ 30044929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1844502
TAACCTGTAATGGTATTATAATGGTAGGAGGCGTGTGTGAACGCCTGCAGCAGGTAGGCCTTGTTCTGGAAGGTGTAGCTGATTTTCCTCTCAAAGTTCTCAAAGCCGGAGATGAGGTGGTTGAGGGTGCGCTCTGCGTCCGGGTGGTCGAACATGCAGCGGGGCGGGATCTTCAGCCAGCCATATTGGACGTCAAGGTTCGCTACCTCTGTGACTCCGCCCTCATCCCTCAGAGTCCGACTCTCCA
>TU1844501
TGCCTTGCATCTCCTTCTTCTCCAGCTGGAATTGCACAAAGTCGTCGATGACGTGGAACAGCTCGGGCGACACAGCCTTGAAGTACTTGTGGTAGTCGTACTGGACGGCCAGGGAGGCGAAGATGGTGTTGTTGACGAGTGCCGAGCGCAGGTCTGTGAGCACGCCGGGAGAGTGTTGGCGAGGGTCTTCATAAAGGTGCTTCGTTATGAGGTAGTCTAAAATTGCATCGCCAA
>TU1844504
CAGATGTACATCGCACTATGACAAACAAACACATGCAACGTTTGTTTCTCATCCAGAAAGCACCAATaaatacaccacaacaaacaaCTTCTTCACCAaagctgcatctgaaatggcaccctattccctatatagtgcaccacttttgaccagagccctaatgggctctatatagggaatagggtgccatttgagatataATCCAACTTCAGAATCCCGGAGATGGACCACCTAACCGTAAACACACCTCAGAGTCCATGCCTTGCATCTCCTTCTTCTCCAGCTGGAATTGCACAAAGTCGTCGATGACGTGGAACAGCTCGGGCGACACAGCCTTGAAGTACTTGTGGTAGTCGTACTGGACGGCCAGGGAGGCGAAGATGGTGTTGTTGACGAGTGCCGAGCGCAGGTCTGTGAGCACGCCGGGAGAGTGTTGGCGAGGGTCTTCATAAAGGTGCTTCGTTATGAGGTAGTCTAAAATTGCATCGCCAA

Function

NR:

description
PREDICTED: endoribonuclease Dicer-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1844502 False 247 lncRNA 0.55 1 30043893 30044139
TU1844501 False 234 lncRNA 0.54 1 30044438 30044671
TU1844504 True 492 lncRNA 0.49 1 30044438 30044929

Neighbor

gene id symbol gene type direction distance location
LOC110498326 LOC106602473 coding downstream 314640 29717062 ~ 29729253 (-)
LOC110498568 NA coding downstream 831786 29208824 ~ 29212107 (-)
LOC110497635 LOC106602575 coding downstream 953404 29008815 ~ 29090489 (-)
LOC110497632 snap23 coding downstream 1086163 28935079 ~ 28957730 (-)
tmem62 tmem62 coding downstream 1277690 28757259 ~ 28766203 (-)
si:dkey-288a3.2 LOC106601776 coding upstream 902524 30911393 ~ 30988951 (-)
bcl11ba LOC106601761 coding upstream 1522424 31567353 ~ 31629055 (-)
setd3 LOC106602337 coding upstream 1608733 31653662 ~ 31717607 (-)
ccdc85ca LOC106602325 coding upstream 1688083 31730827 ~ 31790808 (-)
haus2 haus2 coding upstream 1769537 31814466 ~ 31822631 (-)
G1611436 NA non-coding downstream 3268 30040345 ~ 30040625 (-)
G1611435 LOC106611270 non-coding downstream 4140 30038960 ~ 30039753 (-)
G1611430 NA non-coding downstream 9718 30033967 ~ 30034175 (-)
G1611427 NA non-coding downstream 13091 30029347 ~ 30030802 (-)
G1611426 NA non-coding downstream 14789 30028885 ~ 30029104 (-)
G1611397 NA non-coding upstream 8858 30053787 ~ 30055394 (-)
G1611440 NA non-coding upstream 18002 30062931 ~ 30063134 (-)
G1611442 NA non-coding upstream 23567 30068496 ~ 30069227 (-)
G1611466 NA non-coding upstream 63321 30108250 ~ 30108465 (-)
G1611541 NA non-coding upstream 120223 30165152 ~ 30165368 (-)
G1611431 LOC106602420 other downstream 8211 30034918 ~ 30035682 (-)
G1611392 NA other downstream 88107 29947400 ~ 29955786 (-)
G1611350 NA other downstream 157203 29886345 ~ 29886690 (-)
G1610194 ttbk2 other downstream 1253480 28789421 ~ 28790413 (-)
mideasb elmsan1 other downstream 1312347 28704168 ~ 28735490 (-)
G1613218 NA other upstream 1418192 31463121 ~ 31463896 (-)
G1613722 hipl1 other upstream 1674993 31719922 ~ 31807247 (-)
fbxo34 fbxo34 other upstream 1971271 32013186 ~ 32062575 (-)
G1615240 NA other upstream 2413601 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 2605997 32650926 ~ 32657769 (-)

Expression


Co-expression Network