G1611397


Basic Information

Item Value
gene id G1611397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 30053787 ~ 30055394 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1844459
TTGACTTTAGTGCcctattgcaaacaggatgcatgttatgTAATATTTGCAATATTtctctgtacaggcttccttcttttcactctgtcatttaggtcagtattgtggagtaactacaatgttgttgatacatCCTTAGTTTTTTCCTCTCAcagacattaaactctgtaactgttttgaagtcaccattggcttcatggtgaaatccctgcgtgttttccttcctctctggcaacggagttaggaaggacgcctgtatctttgcagtgactgggtgtattgatacaccatccaaagtgtaagtaatcatttcactatgctcaaatggatattcaatgtctgcttttttttatttgtacctATCTACCAATaaggttgaagtcagaagtttacatacacttaggttggagtcaaagTAGAtgtcaaagtagatgtcctaactcgtttttcaaccactgcacacatttcttgtttattaacaaactatagttttggcaagtcggttaggacatctactttgtgcatgacacaagtaattttcccatcaattgtttacagacagattatttcacctataactcattgtatcacaattccaatgggtcagaagtttacatccactaagttgactgtgcctttaaacagcttggaaaattccagaaaattatatcatggctttagaagcttctgataggctaattgacatcatttgagtcaattagaggtgtacctgttgatgtatttcaaggcctaccttcaaactcactgcctcgttgcttgacatcatgggaaaatcaaaagaaatcagcaccaaaaaaattgtagacctccacaagtctggttcatctgtacaatcaatagtacgcagggataaacaccatgggaccacgcagccatcataccactcaggaaggagacgcattctgtctcctagagatgaaagtacttagGTGTgaaacgtgcaaatcaatcccagaacaacagaaaatgaccctgtgaagatgttggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtcctatatcgatgtaacctgaaaggccgctcagcaaggaagaagccgctgctccaaaaccgccataaaaaaaagccagactacggtttgcaactgcacatggggacaaagatcgaactttttggagaaatgtcctctggtctgatgaaacaaaaatataactgtttgaccataatgaccatcgttatgtttggaggaaaaatggagaggcttgcaagccaaagaacaccatcccaaacgtgaaggaCGGGGGTGgaagaatcatgttgtgggggtgctttgctgcaggagggactggtgcacttcacaaaatagatggcttcatgaggaatgaaaagtatgtggatatgttgaagcaacatctcaagacatcagttaaagcttggtcgcaaatggacaatgaccatacttccaaagttgtggcaaaatggcttagggacaacaaagttaaggtattggagtggccatcacaaagccctgacctcaatccccatagaaaatttgtgggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaacctgactcagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1844459 True 1608 lncRNA 0.41 1 30053787 30055394

Neighbor

gene id symbol gene type direction distance location
LOC110498326 LOC106602473 coding downstream 324534 29717062 ~ 29729253 (-)
LOC110498568 NA coding downstream 841680 29208824 ~ 29212107 (-)
LOC110497635 LOC106602575 coding downstream 963298 29008815 ~ 29090489 (-)
LOC110497632 snap23 coding downstream 1096057 28935079 ~ 28957730 (-)
tmem62 tmem62 coding downstream 1287584 28757259 ~ 28766203 (-)
si:dkey-288a3.2 LOC106601776 coding upstream 892059 30911393 ~ 30988951 (-)
bcl11ba LOC106601761 coding upstream 1511959 31567353 ~ 31629055 (-)
setd3 LOC106602337 coding upstream 1598268 31653662 ~ 31717607 (-)
ccdc85ca LOC106602325 coding upstream 1677618 31730827 ~ 31790808 (-)
haus2 haus2 coding upstream 1759072 31814466 ~ 31822631 (-)
G1611438 NA non-coding downstream 8858 30043893 ~ 30044929 (-)
G1611436 NA non-coding downstream 13162 30040345 ~ 30040625 (-)
G1611435 LOC106611270 non-coding downstream 14034 30038960 ~ 30039753 (-)
G1611430 NA non-coding downstream 19612 30033967 ~ 30034175 (-)
G1611427 NA non-coding downstream 22985 30029347 ~ 30030802 (-)
G1611440 NA non-coding upstream 7537 30062931 ~ 30063134 (-)
G1611442 NA non-coding upstream 13102 30068496 ~ 30069227 (-)
G1611466 NA non-coding upstream 52856 30108250 ~ 30108465 (-)
G1611541 NA non-coding upstream 109758 30165152 ~ 30165368 (-)
G1611606 NA non-coding upstream 134950 30190344 ~ 30194909 (-)
G1611431 LOC106602420 other downstream 18105 30034918 ~ 30035682 (-)
G1611392 NA other downstream 98001 29947400 ~ 29955786 (-)
G1611350 NA other downstream 167097 29886345 ~ 29886690 (-)
G1610194 ttbk2 other downstream 1263374 28789421 ~ 28790413 (-)
mideasb elmsan1 other downstream 1322241 28704168 ~ 28735490 (-)
G1613218 NA other upstream 1407727 31463121 ~ 31463896 (-)
G1613722 hipl1 other upstream 1664528 31719922 ~ 31807247 (-)
fbxo34 fbxo34 other upstream 1960806 32013186 ~ 32062575 (-)
G1615240 NA other upstream 2403136 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 2595532 32650926 ~ 32657769 (-)

Expression


Co-expression Network