G1613798 (LOC106584099)


Basic Information

Item Value
gene id G1613798
gene name LOC106584099
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 31861934 ~ 31863457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1846983
acgtcctctcactgtcaactgcgtttattttcagaaaacttaacatgtgtaaatatttgtatgaacataagattcaacaacagacaaactgaacaagttccacagacatgtgactaacagaaattgaataatgtgtccctgaacaaaaggagtgtcaaaatcaaaagtaacagtcagtatctggtgtggccaccagctgcattaagtactgcagtgcatctcctcctcgtggactgtaccagatttgccagaccatgatggaccctccacctccaaatcgttcccgctccaaagtacaggcctctgtgtaacactcattccttcgacaataaacacaaatccgaccatcacccctggtgagaccaaaccacgactcgtcagtgagcactttttgccagtcctgtctggtccagcaacggtgggtttgttcccataggcgacattgatgtctggtgaggacctgccttacaacaggcctataagccctcagtccagcctcgctgagcctattgcggacagtctgagcactgatggagggattgtgcgttcctggtgtaactcaggcagttgttgccatcctgtacctgtcccgcaggtgtgatgttcggatgtaccattcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtctgtcctgtctccctgtagtgccgtcttaggcgtctcacagtacagacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgcctaagacacgttcacaagttcctgaaaaggggactttcttttttttgctgagtttagataaaAAGGCCATTGCAAAAATCTCGGAGTATCCCTTTaaggcagtggtcaccaaccggtcatCGCTATGGACTGtccgatctccaaggcattcctcgtcgatcgccaaacatttctgtaaaaaacccaGCGATAAAGCCTTGCGTTCCTATTCAATATTTTAGTAGTGAGACGGTAGGTGCACCCCATTCAGCTGCCCTGCGTGCCGGGAAGGTGAAGTGTTCCCATTGaatcatttcatgtgtctgaaggtactaACTCTGCTTTCCCAGCGGGCCCGGAGAGCAAATCAAGTCCTatataggcctaccagatAAGTGTCTGCAGTAAAGTAGTGTGTGTAAAAaatagatatatacagtggggagaacaagtatttgatacaatgccgattttgcaggttt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1846983 True 1235 lncRNA 0.47 3 31861934 31863457

Neighbor

gene id symbol gene type direction distance location
haus2 haus2 coding downstream 39303 31814466 ~ 31822631 (-)
ccdc85ca LOC106602325 coding downstream 71126 31730827 ~ 31790808 (-)
setd3 LOC106602337 coding downstream 144327 31653662 ~ 31717607 (-)
bcl11ba LOC106601761 coding downstream 232879 31567353 ~ 31629055 (-)
si:dkey-288a3.2 LOC106601776 coding downstream 872983 30911393 ~ 30988951 (-)
jmjd7 jmjd7 coding upstream 124018 31987475 ~ 31994210 (-)
fbxo34 fbxo34 coding upstream 149729 32013186 ~ 32062575 (-)
lgals3b LOC106602243 coding upstream 201041 32064498 ~ 32077555 (-)
dact1 dact1 coding upstream 326170 32189627 ~ 32205732 (-)
kiaa0586 kiaa0586 coding upstream 359040 32222497 ~ 32369182 (-)
G1613770 NA non-coding downstream 29498 31831501 ~ 31832436 (-)
G1613704 NA non-coding downstream 137224 31723040 ~ 31724710 (-)
G1613689 NA non-coding downstream 209155 31652039 ~ 31652779 (-)
G1613804 LOC106602308 non-coding upstream 18891 31882348 ~ 31882886 (-)
G1613850 NA non-coding upstream 71197 31934654 ~ 31938245 (-)
G1613876 LOC106602280 non-coding upstream 115883 31979340 ~ 31980194 (-)
G1613880 LOC106602264 non-coding upstream 136465 31999922 ~ 32000388 (-)
G1613883 NA non-coding upstream 137717 32001174 ~ 32001504 (-)
G1613722 hipl1 other downstream 54687 31719922 ~ 31807247 (-)
G1613218 NA other downstream 398038 31463121 ~ 31463896 (-)
G1611431 LOC106602420 other downstream 1826252 30034918 ~ 30035682 (-)
G1611392 NA other downstream 1906148 29947400 ~ 29955786 (-)
G1611350 NA other downstream 1975244 29886345 ~ 29886690 (-)
G1615240 NA other upstream 595073 32458530 ~ 32461579 (-)
G1615357 LOC106602003 other upstream 787469 32650926 ~ 32657769 (-)
LOC110497688 npas3 other upstream 908460 32770921 ~ 33161896 (-)
G1615793 NA other upstream 1548762 33412219 ~ 33413217 (-)

Expression


Co-expression Network