Gene
RNA
| Item | Value |
|---|---|
| gene id | G1615520 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 32919299 ~ 32941384 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1848934 | False | 458 | lncRNA | 0.44 | 2 | 32919299 | 32938903 |
| TU1848935 | True | 649 | lncRNA | 0.43 | 3 | 32919299 | 32941384 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| srp54 | LOC106602043 | coding | downstream | 291245 | 32618859 ~ 32628054 (-) |
| sec23a | sec23a | coding | downstream | 301264 | 32591472 ~ 32618035 (-) |
| clec14a | NA | coding | downstream | 374246 | 32542666 ~ 32545053 (-) |
| LOC110497675 | foxa1 | coding | downstream | 413288 | 32502939 ~ 32506011 (-) |
| LOC110497673 | psma3 | coding | downstream | 504705 | 32400915 ~ 32414594 (-) |
| akap6 | akap6 | coding | upstream | 226359 | 33167743 ~ 33361399 (-) |
| LOC110497690 | arhgap5 | coding | upstream | 423079 | 33364463 ~ 33401640 (-) |
| nubpl | nubpl | coding | upstream | 471836 | 33413220 ~ 33422265 (-) |
| ap4s1 | ap4s1 | coding | upstream | 563470 | 33504854 ~ 33509361 (-) |
| coch | coch | coding | upstream | 594873 | 33536257 ~ 33541969 (-) |
| G1615401 | NA | non-coding | downstream | 105215 | 32749739 ~ 32814084 (-) |
| G1615446 | NA | non-coding | downstream | 106831 | 32811810 ~ 32812468 (-) |
| G1615414 | NA | non-coding | downstream | 159125 | 32758854 ~ 32760174 (-) |
| G1615352 | LOC106602024 | non-coding | downstream | 205255 | 32706604 ~ 32714044 (-) |
| G1615349 | NA | non-coding | downstream | 268807 | 32649587 ~ 32650492 (-) |
| G1615529 | NA | non-coding | upstream | 11591 | 32952975 ~ 32957902 (-) |
| G1615541 | NA | non-coding | upstream | 31554 | 32972938 ~ 32973201 (-) |
| G1615403 | NA | non-coding | upstream | 225772 | 33167156 ~ 33167370 (-) |
| G1615665 | NA | non-coding | upstream | 229636 | 33171020 ~ 33171290 (-) |
| LOC110497688 | npas3 | other | downstream | 143595 | 32770921 ~ 33161896 (-) |
| G1615357 | LOC106602003 | other | downstream | 261530 | 32650926 ~ 32657769 (-) |
| G1615240 | NA | other | downstream | 457720 | 32458530 ~ 32461579 (-) |
| fbxo34 | fbxo34 | other | downstream | 856805 | 32013186 ~ 32062575 (-) |
| G1613722 | hipl1 | other | downstream | 1112052 | 31719922 ~ 31807247 (-) |
| G1615793 | NA | other | upstream | 470835 | 33412219 ~ 33413217 (-) |
| G1615810 | hectd1 | other | upstream | 537209 | 33478593 ~ 33479436 (-) |
| LOC110498336 | LOC106611177 | other | upstream | 2451476 | 35392412 ~ 35396783 (-) |
| G1619119 | NA | other | upstream | 3460170 | 36401554 ~ 36405336 (-) |
| LOC110497753 | spred1 | other | upstream | 3713139 | 36654523 ~ 36840800 (-) |
