XLOC_003541


Basic Information

Item Value
gene id XLOC_003541
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30298703 ~ 30300054 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006926
CAAAGACAGTATATAGGCACAGAGGTAAAGGTTTACAGTGTCAGGAGAACACTTGATGACTTTAACAATGCACTTAGGAGTGATATTCAGTCTAGTGGTCGGTGTAGTCTGTTCTGCAGCGGTGAATCAGAAACCATCCAGGAACAGCAGCTGGACTGGGAAGCTGTTAGTGGTGCCCATGGATGGAAGTCACTGGACAGGGGTGAAGGCCGTAGCAGAAGAAATGGGACGCAGAGGACACACTGTGATTGTGGTGATTCCAGAGATCAGCATGCGCTTGGGTCCAGGCAAACACTACATCACTAAGAAGTTTCCGGTTAAGTGCAAGCCAGATTTACTCAACCAGATGATAATGAAACACATTAATGAATTGTCAGCTCCAGAGCAATCCCTATTGAAGAGAGTGACTTCAAATATCTACAATTTAGGAAAGATTGTTGACTGTTTCATCTCTACAACTGAGAGTCTGTTCCAGGAGCAGGAGCTTATAGAGTTTCTGAGAGATCAAAACTTTGATGCTGTTTTAACTGATCCTGCAATGCCAATGGGAGCCTTATTGGCATATAACCTGTCCGTACCTGCAGTGTACATGCTAAGAGGATTGATGTGTGAATCTAAAGCTACAGCCTGTCCAGATCCTCCCTCCTACATCCCACGTTTCTTCACACAAAACTCAGACCACATGAATTTTGGTGAGCGTGTAAAACACTTGCAAGTTTGATGGAACCGCTGATGTGTGGATTTATGATTCGTACTTTTGAGGAAGTGACGTCCAAATTTCTGCAGAGAGATGTGAGCATGACTGAGATCCTGAGCACTGGAGCTGTTTGGTTGATGCGTTATGATTTTACCCTGGAGTTCCCCAAACCCCTGATGCCCAACATCATTAACATAGGAGGAATTAACTGTGATGTTAACAACCCACTGATGAAGGTGAGCATCACCATTATATGCGTAATGTATAGTGTGTTGTGGGTAACCAAAATGGCAATTTCAGTGTACTGGACCATTTATATTCTGCTGTACAGTGTGTCTTTTCTAATCTACTTCACCAAGCACTGGCATCGCAtgaataaaacagcattttgttgttatttttgtggATCTCATTTTAAACTCTTAGACCCTTGAAGCTCAACattgtgctttgttttgtttttcaagagAAGGTCACTTACTCCTAGTTTCATTGATCAAGGTTTAAGCCTAGTCCCACAAAATAATTTAAGTCTGAGCTGTTTAAATTGAAAGAAACTTGCACTGACTAATTTTAAATCAATCAGAACTTTTGTTTTGTCTTAAGATCGTCCAGTATTTTTCTTTGGCCATGTTCATTGAACCAGGCCTTAGTG

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0048732 gland development biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0003260 cardioblast migration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006926 True 1352 lncRNA 0.42 1 30298703 30300054

Neighbor

gene id symbol gene type direction distance location
XLOC_003539 si:dkey-163f14.6 coding upstream 4618 30282141 ~ 30294085 (+)
XLOC_003538 ppef1 coding upstream 17745 30253968 ~ 30280958 (+)
XLOC_003537 NA coding upstream 45146 30252940 ~ 30253557 (+)
XLOC_003536 rs1a coding upstream 46605 30244356 ~ 30252098 (+)
XLOC_003535 cdkl5 coding upstream 66570 30161168 ~ 30232133 (+)
XLOC_003542 tmem178 coding downstream 213602 30513656 ~ 30531106 (+)
XLOC_003543 CR556713.1 coding downstream 314431 30614485 ~ 30636146 (+)
XLOC_003544 pgap4 coding downstream 336297 30636351 ~ 30642646 (+)
XLOC_003545 tpcn3 coding downstream 347491 30647545 ~ 30661754 (+)
XLOC_003546 ttbk1a coding downstream 363246 30663300 ~ 30728241 (+)
XLOC_003369 CR854846.2 misc upstream 14175621 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 17586707 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 17604440 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 17613104 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 17618675 12679732 ~ 12680028 (+)
XLOC_003534 NA non-coding upstream 194743 30091155 ~ 30103960 (+)
XLOC_003530 NA non-coding upstream 391874 29905248 ~ 29906829 (+)
XLOC_003524 NA non-coding upstream 707507 29590873 ~ 29591196 (+)
XLOC_003523 BX548000.1 non-coding upstream 727175 29566746 ~ 29571528 (+)
XLOC_003550 CR855274.1 non-coding downstream 674717 30974771 ~ 30974892 (+)
XLOC_003551 CR855274.2 non-coding downstream 747800 31047854 ~ 31055288 (+)
XLOC_003554 NA non-coding downstream 904932 31204986 ~ 31212769 (+)
XLOC_003555 NA non-coding downstream 905429 31205483 ~ 31209887 (+)
XLOC_003557 NA non-coding downstream 984930 31284984 ~ 31320539 (+)

Expression


Co-expression Network