Gene
RNA
| Item | Value |
|---|---|
| gene id | G1615810 |
| gene name | hectd1 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 33478593 ~ 33479436 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hectd1 | Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in anatomical structure development and protein K63-linked ubiquitination. Predicted to act upstream of or within protein ubiquitination. Orthologous to human HECTD1 (HECT domain E3 ubiquitin protein ligase 1). |
| description |
|---|
| hypothetical protein cypCar_00032433 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1849241 | True | 557 | TUCP | 0.60 | 2 | 33478593 | 33479436 |
33,475,600
33,476,000
33,476,400
33,476,800
33,477,200
33,477,600
33,478,000
33,478,400
33,478,400
33,478,800
33,479,200
33,479,600
33,480,000
33,480,400
33,480,800
33,481,200
NC_048583.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nubpl | nubpl | coding | downstream | 56328 | 33413220 ~ 33422265 (-) |
| LOC110497690 | arhgap5 | coding | downstream | 76953 | 33364463 ~ 33401640 (-) |
| akap6 | akap6 | coding | downstream | 117194 | 33167743 ~ 33361399 (-) |
| LOC110497688 | npas3 | coding | downstream | 316697 | 32770921 ~ 33161896 (-) |
| srp54 | LOC106602043 | coding | downstream | 850539 | 32618859 ~ 32628054 (-) |
| ap4s1 | ap4s1 | coding | upstream | 25418 | 33504854 ~ 33509361 (-) |
| coch | coch | coding | upstream | 56821 | 33536257 ~ 33541969 (-) |
| opn6b | LOC106602743 | coding | upstream | 67363 | 33546799 ~ 33555237 (-) |
| scfd1 | scfd1 | coding | upstream | 76031 | 33555467 ~ 33578230 (-) |
| g2e3 | g2e3 | coding | upstream | 104210 | 33583646 ~ 33605594 (-) |
| G1615801 | NA | non-coding | downstream | 66461 | 33411815 ~ 33412132 (-) |
| G1615838 | NA | non-coding | downstream | 67924 | 33410366 ~ 33410669 (-) |
| G1615717 | NA | non-coding | downstream | 151641 | 33239467 ~ 33326952 (-) |
| G1615760 | NA | non-coding | downstream | 176895 | 33301275 ~ 33301698 (-) |
| G1615692 | NA | non-coding | downstream | 271635 | 33206684 ~ 33206958 (-) |
| G1615889 | NA | non-coding | upstream | 92775 | 33572211 ~ 33618437 (-) |
| G1615982 | prkd1 | non-coding | upstream | 247859 | 33727295 ~ 33728492 (-) |
| G1616007 | NA | non-coding | upstream | 289352 | 33768788 ~ 33769027 (-) |
| G1616009 | NA | non-coding | upstream | 292441 | 33771877 ~ 33772112 (-) |
| G1616027 | NA | non-coding | upstream | 319470 | 33798906 ~ 33799128 (-) |
| G1615793 | NA | other | downstream | 65376 | 33412219 ~ 33413217 (-) |
| G1615357 | LOC106602003 | other | downstream | 820824 | 32650926 ~ 32657769 (-) |
| G1615240 | NA | other | downstream | 1017014 | 32458530 ~ 32461579 (-) |
| fbxo34 | fbxo34 | other | downstream | 1416099 | 32013186 ~ 32062575 (-) |
| LOC110498336 | LOC106611177 | other | upstream | 1913424 | 35392412 ~ 35396783 (-) |
| G1619119 | NA | other | upstream | 2922118 | 36401554 ~ 36405336 (-) |
| LOC110497753 | spred1 | other | upstream | 3175087 | 36654523 ~ 36840800 (-) |
| G1622757 | LOC106600509 | other | upstream | 5477588 | 38957024 ~ 38958974 (-) |
| si:dkey-229e3.2 | LOC106599591 | other | upstream | 5885821 | 39365257 ~ 39370631 (-) |
