Gene
RNA
| Item | Value |
|---|---|
| gene id | G1615982 |
| gene name | prkd1 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 33727295 ~ 33728492 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| prkd1 | Predicted to enable ATP binding activity; calcium-dependent protein kinase C activity; and metal ion binding activity. Acts upstream of or within regulation of angiogenesis and regulation of lymphangiogenesis. Predicted to be located in cytoplasm and membrane. Orthologous to human PRKD1 (protein kinase D1). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1849425 | True | 1171 | lncRNA | 0.46 | 2 | 33727295 | 33728492 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| g2e3 | g2e3 | coding | downstream | 121701 | 33583646 ~ 33605594 (-) |
| scfd1 | scfd1 | coding | downstream | 149065 | 33555467 ~ 33578230 (-) |
| opn6b | LOC106602743 | coding | downstream | 172058 | 33546799 ~ 33555237 (-) |
| coch | coch | coding | downstream | 185326 | 33536257 ~ 33541969 (-) |
| ap4s1 | ap4s1 | coding | downstream | 217934 | 33504854 ~ 33509361 (-) |
| foxg1a | foxg1 | coding | upstream | 114960 | 33843452 ~ 33845841 (-) |
| sptbn5 | sptbn5 | coding | upstream | 124453 | 33852945 ~ 33907531 (-) |
| ehd4 | ehd4 | coding | upstream | 182117 | 33910609 ~ 33935156 (-) |
| LOC110497707 | LOC106600975 | coding | upstream | 213064 | 33941556 ~ 33957602 (-) |
| rcor1 | LOC106600978 | coding | upstream | 229788 | 33958280 ~ 33969217 (-) |
| G1615889 | NA | non-coding | downstream | 108858 | 33572211 ~ 33618437 (-) |
| G1615801 | NA | non-coding | downstream | 315163 | 33411815 ~ 33412132 (-) |
| G1615838 | NA | non-coding | downstream | 316626 | 33410366 ~ 33410669 (-) |
| G1615717 | NA | non-coding | downstream | 400343 | 33239467 ~ 33326952 (-) |
| G1615760 | NA | non-coding | downstream | 425597 | 33301275 ~ 33301698 (-) |
| G1616007 | NA | non-coding | upstream | 40296 | 33768788 ~ 33769027 (-) |
| G1616009 | NA | non-coding | upstream | 43385 | 33771877 ~ 33772112 (-) |
| G1616027 | NA | non-coding | upstream | 70414 | 33798906 ~ 33799128 (-) |
| G1616036 | NA | non-coding | upstream | 91054 | 33819546 ~ 33819798 (-) |
| G1616048 | NA | non-coding | upstream | 105925 | 33834417 ~ 33834628 (-) |
| G1615810 | hectd1 | other | downstream | 247859 | 33478593 ~ 33479436 (-) |
| G1615793 | NA | other | downstream | 314078 | 33412219 ~ 33413217 (-) |
| LOC110497688 | npas3 | other | downstream | 951591 | 32770921 ~ 33161896 (-) |
| G1615357 | LOC106602003 | other | downstream | 1069526 | 32650926 ~ 32657769 (-) |
| G1615240 | NA | other | downstream | 1265716 | 32458530 ~ 32461579 (-) |
| LOC110498336 | LOC106611177 | other | upstream | 1664368 | 35392412 ~ 35396783 (-) |
| G1619119 | NA | other | upstream | 2673062 | 36401554 ~ 36405336 (-) |
| LOC110497753 | spred1 | other | upstream | 2926031 | 36654523 ~ 36840800 (-) |
| G1622757 | LOC106600509 | other | upstream | 5228532 | 38957024 ~ 38958974 (-) |
| si:dkey-229e3.2 | LOC106599591 | other | upstream | 5636765 | 39365257 ~ 39370631 (-) |
