G1618105 (LOC106601235)


Basic Information

Item Value
gene id G1618105
gene name LOC106601235
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 35546000 ~ 35610522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1851700
TTCCAATCACTTTTTTATTGACATCATTATAGTTTGTCCAGTTGTATCATATATGTGCTataggaccagacagacagacatgctgtCTCAATGCTGCTGTTGGTTGGACCAAATCAAACCAGAGGCCTGGGGCATACTGGACATTCACAACGGGACATGCCATGCAGGCTCCTATTGTGGTTGCTAGGTAGATTCTGCATTCAAAGAAGTACTACAGCAGACGAGAAACATTTACATATTTACCCTATAACTGAGCTGAAAACAGTCAGCTCCTCTCCGCTGTGTACTTCAAGTACAATCTACTCAAAGAAGCATATTGCAGTGTTTGTGACGCCTCTGTAATGTCATTCACtgtaaaatataatttaaaaCGTCTAAAATAATGAACATCTAATAATTACCAGtcagaaataataataatctgcaCTTATAATCAAAGGTAATGTGAAAAAAAAGTCATTTGTTTTGGACAGAAAGAAACCATAGACAAGACATTAAGTGTTTTAGAATCACTGTTTTTGGCATTCACATCAGTGAGCTTGTGACCTATCTAACAAATTTAAGGTTACAGTAACTGAAATAACTACATCGGatgtaacctaacgtagcaggcataaaaCACTTGCCTGAATGGGGTCCCCACATTCTGTTTCCAAGGGGAAACAGCTTAAGTAGAGGTTATACCAACCCGCTGAGGGTGCATCTGATGAAGTTCATCGAGGAGGAGGAGCTCATTTCAAATGCAGTAGCCTCACCTGTTTTTAAACTGTTGCATTCTGGGATGCAGAGGAACAGCAAAAGGACACAACCTCACGACACACGTCTGTGAGGCCTTCCACACTCAGAGTGTGGGATATCATGTAAACTATAGTTTCACCATAAAATATACATCTTTCAAGTGACAGTGTGTAACTTCTTTAACAGTTTTTTTCCCATGAACAAATAACGAAAAGCCTTTTGAACACGCAAATGTACAAACGCACATACAAACAGGTGCATatatacacacgcacagacacgcaTACCGTACATACATACAAGCATTGTCAGGTTAAACACAGTCAGCATCATTTGGGTTGAAAGCTACAACAATTCACCAGcacagacatgggggggggggtctggtgaTGGTATGTACCACTGTAGCCAGCCATTGTCCGCTGCATAGCACTACATTGTCCATGTCATCTGGAATGCAAACCTCTGCAACTCTGTCTGCCTGAAAGTCTCTCTgcaccctccttctcctctcccatcgatcaaCAGCCAGAGAAAACAGATGGATCAGTGAGTAGCCAGCTTGTATGgctaactccccccccccccctccccaccatggatactgaacaaaaatataaaatgcaacatacaacaacttcaaagattttacagttaCAGttcacagagttacagttcacacctgtcaggtggatggattatctaggCAAAggagaaatcagtcaattgaaataaattaattaggccctaatctatggatttcacatgattgggcaggggcgcagccatgtgtgggcttgggagggcataggcccacccacttgggagccaggcccagccgaTCAGAAATAattttacagacagaaatactcagtttcatcagctgcctatatggctggtctcagacgatcccacaggtgaagaaaccggatgaggaggtcctgggctggcgtggttacacgtggtctatggttgtgaggccggttggacgtactgccaaattctctaaaacaacgttggaggcggcttatggtagagaaatgaacattcaattctctggcaacacctctggtggacattcctgcagtcagcatgccaattgcacactccctcaaaacttgagacatctgtggcattgtgttatgtgacaaaactgcactttttgagtgacattttagtgtccccagcacaaggtgcacctatgtagtgagaatgctgtttaatcagcttcttgatatgccacacctgtcaagtggatggacttggcaaaggagaaatgctcaataacagggatgtagacaatttatgcacaacatttgagagaaataacctttttgtgcatgtggaaaatttctgggatctttcagttcatgaaacatgggaccaacactttacatgttgcgtttatatttttgctcagtgtagaTTAGATAAAGGCTGGAGTGCAGGAGTCATAGTCAGGCACAGCAAGGGGTTGTGGTATACGATACAGTGGTCACAGCAGAGACTAGGGGGCGGAGACAGCACATTGGTGTTGGCATGGCAACAACAGTTACATTGATGTATATTATTGGACCAGATAATCAGTGTTTGGATTTTTTGTCCATGGTCCCTCCCTCCAGCTCATCTAGCTAGGCCTATGAATGGCCTCAAGAGGAGAGAGGTAGTTGTCTAATCTCATTGGGATGAAAGAGATGGGCCCGAGACATCACAGGGTGGTTGATGGTGGCGCTTCTGAGGAAGGTTTTTGGCACCTTCACACTGGGGGGGATAaagcagcttgtgtgtgtgtgtgtgtgtgtgtCTATATTTGTAGTGTGATTAGTGACATTTACCATTAAACCCAGCCCAATACCATTATTTCAATTGTTTTGTtgtaaaaacaccagaaaatcagctccaagt
>TU1851699
TTCCAATCACTTTTTTATTGACATCATTATAGTTTGTCCAGTTGTATCATATATGTGCTataggaccagacagacagacatgctgtCTCAATGCTGCTGTTGGTTGGACCAAATCAAACCAGAGGCCTGGGGCATACTGGACATTCACAACGGGACATGCCATGCAGGCTCCTATTGTGGTTGCTAGGTAGATTCTGCATTCAAAGAAGTACTACAGCAGACGAGAAACATTTACATATTTACCCTATAACTGAGCTGAAAACAGTCAGCTCCTCTCCGCTGTGTACTTCAAGTACAATCTACTCAAAGAAGCATATTGCAGTGTTTGTGACGCCTCTGTAATGTCATTCACtgtaaaatataatttaaaaCGTCTAAAATAATGAACATCTAATAATTACCAGtcagaaataataataatctgcaCTTATAATCAAAGGTAATGTGAAAAAAAAGTCATTTGTTTTGGACAGAAAGAAACCATAGACAAGACATTAAGTGTTTTAGAATCACTGTTTTTGGCATTCACATCAGTGAGCTTGTGACCTATCTAACAAATTTAAGGTTACAGTAACTGAAATAACTACATCGGatgtaacctaacgtagcaggcataaaaCACTTGCCTGAATGGGGTCCCCACATTCTGTTTCCAAGGGGAAACAGCTTAAGTAGAGGTTATACCAACCCGCTGAGGGTGCATCTGATGAAGTTCATCGAGGAGGAGGAGCTCATTTCAAATGCAGTAGCCTCACCTGTTTTTAAACTGTTGCATTCTGGGATGCAGAGGAACAGCAAAAGGACACAACCTCACGACACACGTCTGTGAGGCCTTCCACACTCAGAGTGTGGGATATCATGTAAACTATAGTTTCACCATAAAATATACATCTTTCAAGTGACAGTGTGTAACTTCTTTAACAGTTTTTTTCCCATGAACAAATAACGAAAAGCCTTTTGAACACGCAAATGTACAAACGCACATACAAACAGGTGCATatatacacacgcacagacacgcaTACCGTACATACATACAAGCATTGTCAGGTTAAACACAGTCAGCATCATTTGGGTTGAAAGCTACAACAATTCACCAGcacagacatgggggggggggtctggtgaTGGTATGTACCACTGTAGCCAGCCATTGTCCGCTGCATAGCACTACATTGTCCATGTCATCTGGAATGCAAACCTCTGCAACTCTGTCTGCCTGAAAGTCTCTCTgcaccctccttctcctctcccatcgatcaaCAGCCAGAGAAAACAGATGGATCAGTGAGTAGCCAGCTTGTATGgctaactccccccccccccctccccaccatggatactgaacaaaaatataaaatgcaacatacaacaacttcaaagattttacagttaCAGttcacagagttacagttcacacctgtcaggtggatggattatctaggCAAAggagaaatcagtcaattgaaataaattaattaggccctaatctatggatttcacatgattgggcaggggcgcagccatgtgtgggcttgggagggcataggcccacccacttgggagccaggcccagccgaTCAGAAATAattttacagacagaaatactcagtttcatcagctgcctatatggctggtctcagacgatcccacaggtgaagaaaccggatgaggaggtcctgggctggcgtggttacacgtggtctatggttgtgaggccggttggacgtactgccaaattctctaaaacaacgttggaggcggcttatggtagagaaatgaacattcaattctctggcaacacctctggtggacattcctgcagtcagcatgccaattgcacactccctcaaaacttgagacatctgtggcattgtgttatgtgacaaaactgcactttttgagtgacattttagtgtccccagcacaaggtgcacctatgtagtgagaatgctgtttaatcagcttcttgatatgccacacctgtcaagtggatggacttggcaaaggagaaatgctcaataacagggatgtagacaatttatgcacaacatttgagagaaataacctttttgtgcatgtggaaaatttctgggatctttcagttcatgaaacatgggaccaacactttacatgttgcgtttatatttttgctcagtgtagaTTAGATAAAGGCTGGAGTGCAGGAGTCATAGTCAGGCACAGCAAGGGGTTGTGGTATACGATACAGTGGTCACAGCAGAGACTAGGGGGCGGAGACAGCACATTGGTGTTGGCATGGCAACAACAGTTACATTGATGTATATTATTGGACCAGATAATCAGTGTTTGGATTTTTTGTCCATGGTCCCTCCCTCCAGCTCATCTAGCTAGGCCTATGAATGGCCTCAAGAGGAGAGAGGTAGTTGTCTAATCTCATTGGGATGAAAGAGATGGGCCCGAGACATCACAGGGTGGTTGATGGTGGCGCTTCTGAGGAAGGTTTTTGGCACCTTCACACTGGGGGGGATAaagcagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcctctcTCTCCCAGGTCAGAGTTGTCGTGGTATGATGGTGAAGGGGAGTATGGGGCTGGAGGCCTCTAGCTCCAGGGCGGTGAGGAAACACTCTGTCGCGGCAGCAGCGTTGCCCTGAGCCTGCAGCACCTCCCCCAGGCTGTTCCACACGTCGTGGGCCGTCGAGTTCACCTGCACCGCATCCCGAAGGATCTTCTCTGCCAGGCTGTACCGCTGCAGCTGGTGCAGGATCAGAC

Function

NR:

description
hypothetical protein EH28_03751

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1851700 False 2643 lncRNA 0.43 3 35546000 35610522
TU1851699 True 2797 lncRNA 0.45 2 35607702 35610522

Neighbor

gene id symbol gene type direction distance location
ralgapa1 ralgapa1 coding downstream 7238 35460212 ~ 35538762 (-)
LOC110497729 LOC106601178 coding downstream 104113 35439126 ~ 35441887 (-)
LOC110498336 LOC106611177 coding downstream 150680 35392412 ~ 35396783 (-)
LOC110497725 LOC106601170 coding downstream 168347 35361013 ~ 35377653 (-)
LOC110497723 LOC106601119 coding downstream 209592 35328793 ~ 35336408 (-)
LOC110497737 LOC103380713 coding upstream 37182 35647704 ~ 35661845 (-)
LOC110497733 LOC106601249 coding upstream 78947 35689469 ~ 35703718 (-)
zgc:174356 LOC106601284 coding upstream 285090 35895612 ~ 35935389 (-)
LOC110497741 LOC106601320 coding upstream 614705 36225227 ~ 36237234 (-)
ccdc88c LOC106601343 coding upstream 630258 36240780 ~ 36323039 (-)
G1618091 NA non-coding downstream 12789 35522008 ~ 35533211 (-)
G1618069 NA non-coding downstream 90961 35454631 ~ 35455039 (-)
G1618066 NA non-coding downstream 95077 35449560 ~ 35450923 (-)
G1617914 NA non-coding downstream 109472 35436302 ~ 35436528 (-)
G1618137 NA non-coding upstream 655 35611177 ~ 35611476 (-)
G1618162 NA non-coding upstream 35266 35645788 ~ 35646011 (-)
G1618163 NA non-coding upstream 35601 35646123 ~ 35646348 (-)
G1618184 NA non-coding upstream 94521 35705043 ~ 35705339 (-)
G1618186 NA non-coding upstream 95601 35706123 ~ 35706815 (-)
G1615810 hectd1 other downstream 2066564 33478593 ~ 33479436 (-)
G1615793 NA other downstream 2132783 33412219 ~ 33413217 (-)
LOC110497688 npas3 other downstream 2770296 32770921 ~ 33161896 (-)
G1615357 LOC106602003 other downstream 2888231 32650926 ~ 32657769 (-)
G1619119 NA other upstream 791032 36401554 ~ 36405336 (-)
LOC110497753 spred1 other upstream 1044001 36654523 ~ 36840800 (-)
G1622757 LOC106600509 other upstream 3346502 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 3754735 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 3785546 39396068 ~ 39411784 (-)

Expression


Co-expression Network