G1620509


Basic Information

Item Value
gene id G1620509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 37503335 ~ 37516479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1854329
cacacacgagacctTACCTTGTTGGGCTGTCCAAAGAAGGGGTTCCCAGCACAGCGCTGGTTGATGACATCTCTGATGAGGTGTTTCTGTCCATTGTAGGTGGTGAGGATGCTGATCCTGTCGGCAGGGTAACCCAACAGACGCATGTACATGAACAGAGCCACACAGTACTCTGCCTCACCGAGAttCTGGTAGAAGTAAGGGTTGGGCTCGGACTCTCCCACTCCGTTGAAGTCCTCCACGTTGATTAGCTGGAAGTCGAAGGTCAGGCCAGGGTTGGGGGCCTGGAACTGGGGCAAGAGCTGTACGTGGGGCAGGTTCCCCAGCTGCTTATAGCGCCAGTTATACAGGTTAcacagaCTGGCGCGGGCACGTCCCTGAGCGTCCAGGTCGACGGTGGGCACCCCTAGGCGTACGAAGCGGGTGAACAGGGACTGCTCCATGTTGGAGTACTTCTGGAAGGCCATGTTCTTAATGACAGGGGGCAGCTGGTGGTGGTCTCCTATCATGATCCAACGCTTCAGCCTGCTGTAACCGTCCTCTGGGTTCTGCAGCAGGAGAGGGATGAAGGTCTCGATCTCCAGGATCTGAGCTGCTTCCTCCATCAGGATGTTGTCATAcTTGAAGCCCAGCTCTACCAGGTCATGGCGTTTGAGGGCAGCGTGGGTGCAGGTCATAGCGATGATCTTAGCCTCCTTCACCAGCAGGTACTTGGAACGGTCCAGTCCACTCCTCAGCAGCTCAAAGGCCCGGAACTCCTGatggacacggacacacacactagTAAGAAGGTGGTTCAGAGGGCTGGGGATAGGGTTAAAGGTTAAATCATCAGCATTGCCAGGTAGTGATGTCTG

Function

NR:

description
PREDICTED: intron-binding protein aquarius-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1854329 True 857 lncRNA 0.56 5 37503335 37516479

Neighbor

gene id symbol gene type direction distance location
cdin1 cssa01h15orf41 coding downstream 259877 37166770 ~ 37243458 (-)
LOC118941471 NA coding downstream 466812 37029254 ~ 37036523 (-)
LOC110497753 spred1 coding downstream 662535 36654523 ~ 36840800 (-)
fam98b fam98b coding downstream 745851 36748853 ~ 36757484 (-)
LOC110497751 LOC106601420 coding downstream 763706 36719921 ~ 36739629 (-)
stxbp6 LOC106601569 coding upstream 144953 37661432 ~ 37821260 (-)
LOC110497761 LOC106601584 coding upstream 318182 37834661 ~ 37916564 (-)
ddhd1a LOC106601609 coding upstream 408030 37921022 ~ 37957112 (-)
LOC110497764 NA coding upstream 443670 37960149 ~ 37982215 (-)
LOC110497772 LOC106600726 coding upstream 818880 38335359 ~ 38341245 (-)
G1620189 NA non-coding downstream 280783 37220422 ~ 37222552 (-)
G1620150 NA non-coding downstream 332170 37170763 ~ 37171165 (-)
G1620081 NA non-coding downstream 338333 37164797 ~ 37165002 (-)
G1620079 NA non-coding downstream 339499 37163433 ~ 37163836 (-)
G1620058 NA non-coding downstream 354259 37148857 ~ 37149076 (-)
G1620506 NA non-coding upstream 40856 37557335 ~ 37560090 (-)
G1620876 NA non-coding upstream 88578 37605057 ~ 37611095 (-)
G1620877 NA non-coding upstream 94332 37610811 ~ 37616855 (-)
G1619119 NA other downstream 1097999 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 2106552 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 4023899 33478593 ~ 33479436 (-)
G1615793 NA other downstream 4090118 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 1440545 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 1848778 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 1879589 39396068 ~ 39411784 (-)
G1623175 NA other upstream 2158960 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 2950865 40467344 ~ 40547622 (-)

Expression


Co-expression Network