G1622592 (odc1)


Basic Information

Item Value
gene id G1622592
gene name odc1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 38626013 ~ 38627928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1856681
GGCAGACTGCTCGTTCATGATGACCTTCTTTGCGATGACGTTAACAGCTAGGGTGTAGGCAGAGGCCACATAGTAGCGGCCTGGCTCAGCAATGATCCGGATCCCAGAGTCGGCAGGGAAATACTTGTCCAGTGCTGGGTTGATAACTGCTGTGATCTCCTCAAACTTGAGCTTGGTATCCTCAGACCCAGGGAAACCGCCACCAATGTCCAGGAGGGTCATGTTGAAACCCACCTCAGCCTGCAGAAAAGAGAACCAACAAAGATGAGTTAGACCTACTGCAGGTTACGGGTCCATTTATAAAATGTAGGTGATACGTTCCAAGCAGAAAGACACTCACCCCCATGTCAAAGACACAGCGGGCATCAGAGATGGCCTGGCTGTAGGTTTCTGGGTCAGTACAGCCACTCCCCACGTGGAAGCTGACCCCGATAACGTCCAGGCCCAGTTCCTTAGCCCTCTCCAGGAGACCCCGGCATGCCTTCATGGTGGCACCAAACTTGACACTGAGCTGGCACACGGCCTTGGAATCATCTGTGGCAATGCGCAGGACTAGTCTGGGCAGGGAGAAAGAAAAGTTGGAGGTGCACTTTTCTAGAGTAGCCGGATAAGTTACTTACAAAACCAAGTGTTTTCAGTGTGGCTAAAGAATAGCCATGGAGATGTTTCTTACTTGGCATTGTTGTGGCACCGAGCCACCTTCATGAGTTCCACGTCGCTGTCGAAGGTCATCATCTGCACGCCGTGAGCAGAGGCATACTTGATCTGGGATACCTGCTTGCAAGGGTTGGCGTAGATGATCCTGCTAGCGTCCACACCCAGAGACTGAACAATCTGGATCTCAGTCTGATGGGACAAAAACAGACTGGGTCAGAACAGGAAACACGCTCACAGGGCAGCAGGGCCAGGGCTACTTCAATAAACCAGTAGATGTTTAGAATGAGACATACCTTGCTTGCACAGTCAAAGCCAGCGCCCAAGGAGGCCAAGGTCGTGACAACAGTCCGGCTGTCATTGCATTTGACAGCATAGAAGGGCGTTACGCGGGGCATGGCACGCGCCCATCGCATGTGCTTCTTCAGCACGTCACTCAAGTCGCACACGTAGAAGGCATCCTTATCATCCGACATGGACATCTCATTGATCTTCTGCTCAACAATGTCACGGGCACAGAAGCCCTCCTCCAGGAAGGTAAAATCGGCAGGAGCGAAAGTGTTCATGGTCGCAGAATAACTTTTAGATTGGTCACAAAAGAAAACTGGACAAGAAAGAGTTGGAATTTGGCAAAGTAGTTTAATCAGGTGCAGAGCAGCCAAGGCGGTTCACCAGTGAAGTTGAAACCTTTCACATAACACTCTAGGCCGGGGCCTGCAGAGTAGCCAGTCTGCGCTTTCCTAAAGCGATTATTCTGCAAACAGTAAAATACAATTTGTAGCATAAAGAGGACAGTGTCATTTGCTGTGTTGAGTTTTATGGCTATTTCCTGCATTCAGTGTCAATCAGACCTATTATCATTGTTAGATAACAGTAACTGCTCCTCCTATAGTATTAACAGCAACAGTCTTATCCAGATGAATAGGCAA

Function

symbol description
odc1 Predicted to enable ornithine decarboxylase activity. Acts upstream of or within eye photoreceptor cell development. Predicted to be active in cytoplasm. Is expressed in neuromast and ovary. Orthologous to several human genes including ODC1 (ornithine decarboxylase 1).

NR:

description
PREDICTED: ornithine decarboxylase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1856681 True 1583 lncRNA 0.50 3 38626013 38627928

Neighbor

gene id symbol gene type direction distance location
LOC110497781 NA coding downstream 11176 38610397 ~ 38614837 (-)
LOC110498572 NA coding downstream 93182 38531785 ~ 38532831 (-)
c19h2orf50 cssa01h2orf50 coding downstream 104539 38517334 ~ 38521474 (-)
LOC110497775 pdss2 coding downstream 201709 38366751 ~ 38424304 (-)
LOC110497773 LOC106600707 coding downstream 269563 38350810 ~ 38356450 (-)
LOC118941360 LOC106600306 coding upstream 12265 38640193 ~ 38644960 (-)
dapp1 dapp1 coding upstream 17454 38645382 ~ 38654033 (-)
LOC110497783 LOC106600563 coding upstream 26258 38654186 ~ 38674247 (-)
LOC110497787 LOC106600539 coding upstream 81290 38709218 ~ 38762160 (-)
LOC110497790 gnpi coding upstream 264461 38892389 ~ 38898821 (-)
G1621664 NA non-coding downstream 82702 38542967 ~ 38543311 (-)
G1621655 NA non-coding downstream 92564 38533203 ~ 38533449 (-)
G1621639 NA non-coding downstream 119968 38505818 ~ 38506045 (-)
G1622712 LOC106600528 non-coding upstream 199967 38827895 ~ 38830390 (-)
G1622673 LOC106600519 non-coding upstream 218824 38846752 ~ 38850340 (-)
G1622763 NA non-coding upstream 282354 38910282 ~ 38910570 (-)
G1622764 NA non-coding upstream 283017 38910945 ~ 38911226 (-)
G1622771 NA non-coding upstream 299479 38927407 ~ 38927623 (-)
LOC110497753 spred1 other downstream 1857314 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2220677 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3229230 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5146577 33478593 ~ 33479436 (-)
G1615793 NA other downstream 5212796 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 329096 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 737329 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 768140 39396068 ~ 39411784 (-)
G1623175 NA other upstream 1047511 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1839416 40467344 ~ 40547622 (-)

Expression


Co-expression Network