G1622712 (LOC106600528)


Basic Information

Item Value
gene id G1622712
gene name LOC106600528
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 38827895 ~ 38830390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1856808
AACCATTTATTATGAGGACATGTAATCATATATACATAATGAATAACAGCTTTATATTGTGCATTAGCTTCAATGTTAACAATTTATGTAATACTGTTTATAAGCAGTTTATAAGCAGACCTTTAAACAAAGTGTTACCTGTTGGACTTGATATGACTACATTAGAAGCACTTACAGTTTggtccaaaatgattgacacccttgataacgATGAATGCCGGTAtaaaataataattcaaatatTGAGCTATGTTGTATGCAAAAAAAATTGGTAATCTTATTCATTTATTTACAATTAATCAGAGAAACAGATTTTGGTTAACAACTGATTAagggtcaaaattattgacacccctgttttcaaaacctttcaatacctcaccttgggAGGATAACGGCACTGAGACTTagattcctccatacagaatctttccagatccttgatatccttcatcgacacttatggactgccctcttcaattcaaaccacagaatcTCAATGGGTTTCAAGTCAGGAGACTGAAATAGTCATTGCAAAATAATGTCTTTGTGGCCAATTAACAATTTATTTGTGGATTTGGTTTGTGCTTATTGTCTTGGTTATcatccacttgcggccaagtttcagcctcctggcagaggcaaccaggtttttacTAAAATGTCTGGggaacaattaagtaccttactgtgattaaaaaacatttaaatggccaaaaataaacaaaaatagcttcttagcaaagaacaATTTCTCAACTAAGAATTTTGAATGGAcggtctgggagtggtctgagtgggaagggAAAAACGGAAATTGAAATGTTAttagcagagaggtttggaactctattTCTTACTGATCTATTCACACATTTACCgtatggtgatgtcaccatggaaggccaaaactccatcccacaaaAACTGTCAGAAATTTTAGGTGACCTTTTGAAACAGCTCATACACTAAAAggacattatcataattttctcaATTTCCCAGTATTACTCCAACCTCATAGAGTGGAAATATAAGACACAGAAAAATGTCCCCCCAAATGCATGTAAATGCCTGGAGTTCGCTAaatggcattggcacttggattggaaccagtgctttggtcagatgacatgaaaatagagctctttggccccatacctactgtaaaatatggtggtggatctttgctTGTCCTGGGGGCCATTTAAGCATATAAcatgcatacaatatagctcaatttttaaatgatttattttatagTTGTTTTTTCTCCTCTTTATCAATGGTGTCAATCATTTCCAACTCCACTGTATGCATCTGGGTCCTTTGATCTGCATCAGAGAAAAAAAGCTACATTGCATATAAAATGGTGACAACAGGAAATCACATACTTGAGTCATAACTCTATGATAGATAAGTGATATTAAATATTGGCATACAGTACATTCCTGCAAACCTTACTCACACTGTCTATTCACTGTCCTCTGTCACAGTGTCTTTGAGTCTACGATAGGAAGTGATCCTTCATCCATCCCTGAACTTATGGTGAGTCTAGCTGTGTACTGCCGGAACCTGCAGGATCAACACTCATTTGTGTAGATCTGTGTTCACTGTGTGATTGAAAAAATGGTGCAACATGACTGTACGGTCTTTAATTCCAACTTATGAATTTGATCCGATTAAATCGTAAGATATGAAGAGCATGATATAGGTTAATAATGGAACAAAAACAGGAAATTGTTGTCTGTGCTTTCTTATACTGGAGTCTTCAATACAGGGTTATAACTAGGAGTTGGTAACTATTTTTTTGTGTTGAATTAATTATGGCAGTTGGTTTCTTGGAGGTTCAAATATAAGTTAGAGAAAGCACCAGTGGTTTCTTTATTTATGTAACGATAAGATCCTTACATCACTATAAACAAACAATCGTTAAATGTTAACCTCTTTACAAGTATAATCTCTCAAACAAATTACAATTCAACTAGAAGTTAGTAATCATTTACCTGGGTATCTCCTCGTAATGAATGCGCCTACAAAAGAAAGCAACCATATTGACTCCAGTGCATGCCACGGCTCCATGTAACCAAACTCACACACATAAAAGCACACAGATCATCAGTCCTGGGTCAGCTGTGTAAAGTGAATCCTGTCACCTTGCAAAGTGAATATTTTGTATTCATTTGGACGGGACCATGTCCTTTATGACTGGTTCTCTGTTCAGGTAGGTGGCCCAGTAGACCAGGTTAAAACCACTGAAGAGCACAGGGAACATAATCCGGGACATACGGTCGATTTTGCTGACGCTGTTGAAGGTCTTCTTGTTCTGCTCGGGCTTGACCTCTGGCTTGGCCTTGTTGGGGTCAGAGGTGGCACTCTTGGAGATGGTGGGCATACCGCCTTGGTCCTTGATGATGTTTGGAGCGTAGTTTGCCACGGCAACAGCGTAGGCATTGTTCTTCTTCGTGACGG

Function

NR:

description
gamma-aminobutyric acid receptor subunit alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1856808 True 2472 lncRNA 0.38 2 38827895 38830390

Neighbor

gene id symbol gene type direction distance location
LOC110497787 LOC106600539 coding downstream 65735 38709218 ~ 38762160 (-)
LOC110497783 LOC106600563 coding downstream 153648 38654186 ~ 38674247 (-)
dapp1 dapp1 coding downstream 173862 38645382 ~ 38654033 (-)
LOC118941360 LOC106600306 coding downstream 182935 38640193 ~ 38644960 (-)
LOC110497781 NA coding downstream 213058 38610397 ~ 38614837 (-)
LOC110497790 gnpi coding upstream 61999 38892389 ~ 38898821 (-)
LOC110497791 LOC106600514 coding upstream 80891 38911281 ~ 38926911 (-)
lrit3b LOC106600744 coding upstream 105025 38935354 ~ 38939611 (-)
ampm1 ampm1 coding upstream 155407 38985797 ~ 38988755 (-)
enpp4 enpp4 coding upstream 394300 39224690 ~ 39231092 (-)
G1622592 odc1 non-coding downstream 199967 38626013 ~ 38627928 (-)
G1621664 NA non-coding downstream 284584 38542967 ~ 38543311 (-)
G1621655 NA non-coding downstream 294446 38533203 ~ 38533449 (-)
c19h2orf50 cssa01h2orf50 non-coding downstream 309214 38517334 ~ 38521474 (-)
G1622673 LOC106600519 non-coding upstream 16362 38846752 ~ 38850340 (-)
G1622763 NA non-coding upstream 79892 38910282 ~ 38910570 (-)
G1622764 NA non-coding upstream 80555 38910945 ~ 38911226 (-)
G1622771 NA non-coding upstream 97017 38927407 ~ 38927623 (-)
G1622772 NA non-coding upstream 97317 38927707 ~ 38928311 (-)
LOC110497753 spred1 other downstream 2059196 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2422559 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3431112 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5348459 33478593 ~ 33479436 (-)
G1615793 NA other downstream 5414678 33412219 ~ 33413217 (-)
G1622757 LOC106600509 other upstream 126634 38957024 ~ 38958974 (-)
si:dkey-229e3.2 LOC106599591 other upstream 534867 39365257 ~ 39370631 (-)
G1623037 LOC106586451 other upstream 565678 39396068 ~ 39411784 (-)
G1623175 NA other upstream 845049 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1636954 40467344 ~ 40547622 (-)

Expression


Co-expression Network