G1622784


Basic Information

Item Value
gene id G1622784
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39003830 ~ 39005396 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1856886
AAACTGAAGTGCAAAGCTCAGTTTATTTATGAATTGGGAATAAAATACCCAAATGCATTTCATAATGTATGAATGTTGAACAGCAGTTATGAAAGTAACTGGTAGCACTTGTGTTTGGCCAAAAGAATGAAACATGCCTGGCATAATGGCAACTCATACTTTCATGAGCCATGAAATGGTAAGTATTTGAGCGCTCTAATTTGGTGTCATGACATTGTCATGGGTTGTAGGCTTTCATGAAATGCCACAACAGGTAATACTGTAGGTGTAGCTACTATATTGCTTTATACATTATTCAGCTCTACATTAAGTCTCTAGGGGTGACAGGGGCAGACCAACTAGCTATGGCAAGACAAGTGGCATAGAAAGTTAGATTGTTTCCTGGGGTTGAAATGGTATATTATTAGGCCCATATTATATAATTAAAAATGATCtgaagtcacagaaaaacattaTTTAAAGACTCATTCGTGCTGTGTTTCCATTGCAGTTAACAAAGACTAATTGAGTCATGAAATTATCAGAAAGGCTTGATTACATGCGCTTGAGGTTCAAAGGagaagtatttttttttacaaccaaatcCCTATTTTTGATGTAAATGGTATGTTATAGAAGGGCCCCTAAACTACACAAGGATGAAGAAGTGATTTGCTGGTTagggtaagtttctcaaaaacaagtgaaatcACAAAAAAGGATATTCTATAACATGTCATTTagcattaaaaaaaagaaaaattacAAAAAACAAATCACCTTTAAGGCCATAGCACAAAACAAGTTAAAAAAAATGCTAAAAAGCAAATTGGTATAATAAATTAAAAAAGTGTAACATCattaaggattacagcaattacAATGCTGTATACAAGGGCACtgagaaatgttttatttttgcaTTTCAAATGAATTCCCTGCcattaaataaatcaaaaaaaTAACTTTCTTTATAAGAACACTCAGAACATCTTACATTTCCTACTATGAACATTCTTCATTTGCATTTTGAGGTTTGCATGTTCACCTGCATGGCTATGACATGTGAATTAATAGCattggcaggtgtgtgtgtgtgcgtgggggggGGGTTCCAGAGAAAGTAGTGTGTCCTGTTAATAAAGTTTTTCCTGTGTTCACAGGTCTAGGGCTGTTTCTGTTGAAGCTTTGGTATATAGTCATGGATTTTTCCCAGATTTCGTCACGCAGCCATTGCTATATTAAGTAAATATAACCTACCCACAATGAAAAGTAGACCAAACAAAACAAGGCACACGGTTCATTTTCAGACAACAAACTTGTTTTTGGTGGTGGAGCCGCTCTTTGTGGCGGTGTCAGAGTGGGACTGGTAGCCAATGGTCATCTTCATGGGGATTCCCAAGCGCTCCTTATAGA

Function

NR:

description
eukaryotic translation initiation factor 4E-1A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1856886 True 1395 lncRNA 0.36 2 39003830 39005396

Neighbor

gene id symbol gene type direction distance location
ampm1 ampm1 coding downstream 15075 38985797 ~ 38988755 (-)
lrit3b LOC106600744 coding downstream 64219 38935354 ~ 38939611 (-)
LOC110497791 LOC106600514 coding downstream 76919 38911281 ~ 38926911 (-)
LOC110497790 gnpi coding downstream 105009 38892389 ~ 38898821 (-)
LOC110497787 LOC106600539 coding downstream 241670 38709218 ~ 38762160 (-)
enpp4 enpp4 coding upstream 219294 39224690 ~ 39231092 (-)
cdc5l LOC106599718 coding upstream 236802 39242198 ~ 39263880 (-)
LOC110498575 LOC106599699 coding upstream 270847 39276243 ~ 39278434 (-)
LOC110497802 LOC105031663 coding upstream 273300 39278696 ~ 39285767 (-)
si:dkey-229e3.2 LOC106599591 coding upstream 359862 39365257 ~ 39370631 (-)
G1622775 NA non-coding downstream 71478 38931301 ~ 38932352 (-)
G1622772 NA non-coding downstream 75519 38927707 ~ 38928311 (-)
G1622771 NA non-coding downstream 76207 38927407 ~ 38927623 (-)
G1622764 NA non-coding downstream 92604 38910945 ~ 38911226 (-)
G1622892 NA non-coding upstream 166312 39171708 ~ 39171949 (-)
G1622914 LOC100380701 non-coding upstream 190091 39195487 ~ 39196095 (-)
G1622918 LOC106599729 non-coding upstream 199901 39205297 ~ 39207491 (-)
G1622936 NA non-coding upstream 215287 39220683 ~ 39220918 (-)
G1622987 NA non-coding upstream 320893 39326289 ~ 39326730 (-)
G1622757 LOC106600509 other downstream 44856 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2235131 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2598494 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 3607047 35392412 ~ 35396783 (-)
G1615810 hectd1 other downstream 5524394 33478593 ~ 33479436 (-)
G1623037 LOC106586451 other upstream 390672 39396068 ~ 39411784 (-)
G1623175 NA other upstream 670043 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1461948 40467344 ~ 40547622 (-)
G1624738 NA other upstream 1624369 40629765 ~ 40630208 (-)

Expression


Co-expression Network