G1623038 (LOC106586451)


Basic Information

Item Value
gene id G1623038
gene name LOC106586451
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 39400240 ~ 39404651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1857218
GCTTTTTCATTTTTACATCCATTTCTGTAGCAGCTCCCTCAGGCATTTCAACTTCGCCAGAAGGCACTTTGAGTTCAATGCTTGGTGGTTGGACCTTCATTTTGACCTCTGGTAAAGTgacgttttcattttttttacgaTTGACATCTATAGATGGACCTTTAAGGTCAACACTTGGCTTTTCGATGTTAAAAGCTGATATTGTCAGCTTGGGTTCAGGTATTTCAGTTCCATGAACCTTGATGTTCTTGTCCAAATCAGGTACCTCTATTGTGACATTTGGAGAAGCTGCTCCAAATGTAGGGAATTTTAAAGTTGGCATTTTGAATCTTGAGGGGGAGCCTACGGAATCTTTCACATCAACTTGAATCTCTGGAGTTTTCATTTCCACCTCTGGCTCTTTGACCTCCAACTTTCCCTCTGGATGAGAAATATCCACCTCTGGAAGACTGATATCAACCTCTGGTGCTTTCACTTCAGGTTTTGAAAATCCAAATTTGGGGAATGACATTCTTGGCTTTCTCATTTTCACATCAATATCTTTAGAACCTGCTTCTGGTATTTCAACTTCAACAGAGGGCACTCCGACTTCCACATCAGGTAGTTGGAGGTCTGCTCTTCCCTCTGGAAAGTCGACATCTACATCTGTCTTTGACAGACTTAAGCCAATTTTAGGACCTTTAACTCTCGGCAACGAGAGTCCAAATTTTGGTAATTTAAATTGACTTCCTTGACCCTCAAGCTCAATATCATGTTTCATTTCA

Function

NR:

description
neuroblast differentiation-associated protein AHNAK-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1857218 True 764 lncRNA 0.41 2 39400240 39404651

Neighbor

gene id symbol gene type direction distance location
si:dkey-229e3.2 LOC106599591 coding downstream 29609 39365257 ~ 39370631 (-)
LOC110497802 LOC105031663 coding downstream 114473 39278696 ~ 39285767 (-)
LOC110498575 LOC106599699 coding downstream 121806 39276243 ~ 39278434 (-)
cdc5l LOC106599718 coding downstream 136360 39242198 ~ 39263880 (-)
enpp4 enpp4 coding downstream 169148 39224690 ~ 39231092 (-)
si:dkey-196h17.9 LOC106586342 coding upstream 93969 39498620 ~ 39503300 (-)
ckba ckb coding upstream 145848 39550499 ~ 39561200 (-)
LOC110497819 bag5 coding upstream 185690 39590341 ~ 39605843 (-)
LOC110497823 LOC106599217 coding upstream 284907 39689558 ~ 39692818 (-)
syne2b LOC106599102 coding upstream 550475 39955126 ~ 40097979 (-)
G1622987 NA non-coding downstream 73510 39326289 ~ 39326730 (-)
G1622936 NA non-coding downstream 179322 39220683 ~ 39220918 (-)
G1622918 LOC106599729 non-coding downstream 192749 39205297 ~ 39207491 (-)
G1622914 LOC100380701 non-coding downstream 204145 39195487 ~ 39196095 (-)
G1623061 eif5 non-coding upstream 114326 39518977 ~ 39558601 (-)
G1623106 LOC106610955 non-coding upstream 126209 39530860 ~ 39531284 (-)
G1623130 NA non-coding upstream 170030 39574681 ~ 39575099 (-)
G1623129 NA non-coding upstream 247080 39651731 ~ 39652207 (-)
G1623128 NA non-coding upstream 250018 39654669 ~ 39656645 (-)
G1622757 LOC106600509 other downstream 441266 38957024 ~ 38958974 (-)
LOC110497753 spred1 other downstream 2631541 36654523 ~ 36840800 (-)
G1619119 NA other downstream 2994904 36401554 ~ 36405336 (-)
LOC110498336 LOC106611177 other downstream 4003457 35392412 ~ 35396783 (-)
G1623175 NA other upstream 270788 39675439 ~ 39681529 (-)
LOC110497838 trmt5 other upstream 1062693 40467344 ~ 40547622 (-)
G1624738 NA other upstream 1225114 40629765 ~ 40630208 (-)
G1624737 NA other upstream 1225927 40630578 ~ 40631738 (-)
LOC110498350 NA other upstream 1290824 40689096 ~ 40699267 (-)

Expression


Co-expression Network