G1623578 (hif-1a)


Basic Information

Item Value
gene id G1623578
gene name hif-1a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 40353882 ~ 40356016 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1857864
TTTGGGAGTAATTTTATGTTAGACAGCAACAGGAAGCATGAAAGAAACCCAAAACTGCAGTATGTGGACCAATACCATAAAACAGACAACTGAGAAAACAGGTATGCAAGAGTAACACTTGCTACTAATAAATGAGAATTATACTGGTAAAATATGATCATATGATGGTGCTAAGGAAGTACATGTTACTTCAATCTAAATAAACCATTTGGGTCTGACAACTAAAAATGTATTGATTACATGATCAAACTGAGGGGCCAATCCTCCAATCTTAAAAACAAACGGATTTAGATCTAATTATACCGCGCACATGTATTTATTATTCATGACAAGGCATTTAAGCAATCTCTGAATGTTCCCCTGGTCTATGCAcagtaacaaacacacacatacagtagtaaAGTAATAAAGTGACAAGTACTGAATGACTACACATTTGCCTAAAATACTGGTAACCAGTAATGGGGATATAACATTCAAAAATACCTTCTGGACCAAATAGTATTGTTATACACAACATAAGAATGCAGAggaaaaagtaaaataaaatggTTGAAATTCCATTAAAACTACTTTTTAAAAGGCTTAATATAGATTGCTGGTaatctttttttctttttaagaAAATATAAATTGTGCGACTGAAGCTTACAATACACTGCTGGCAGTAGCACCGCCGGTTTTCCTGGAGACCTGATACAACAGAGCCATCCATGGAGGTGCCATACGTTTGCTGTCAGAGACTCCCGAGAAAGAAACAATTAGGTGCCTCTACCTGcaaacactacaacatccccaaCACTAACTCTAACGCTGCAGATATCACTTGGTGGATGCAGACAGCAGCCAAACTATAAGATCACTGATACAGAGAGACAAATAAAGGGGCAGCGGGTGGGGACAGAGTGAATGAGGAGAAGTTGTAGTGTCTGGTCTGGTCCAGCAGGGGGCAGGCTAAGCGTTGACTCAGTTGACTTGGTCCAGGGCACTCAGGAGCTCCTCGCCCTGCAGCAGGAGCTGGCGACCCCCCACGGGGGCGTTGACCTCACAGTCATATCGGGTCAGCTGAGGAAGGGTGAAGGGTGAGCCGCTGCCCTCCGATGAGATGCCAAGCAAACGGCTTGCCAGGTCTGTAGGCAGGAGCAGTATGGTCCTGTTGGAGGGAGCATCAGCGTGGCTCAGCTCAGATACTTTGAGCTTTTTACCTGGACCAGGATGGTCTTGGAGCAATCCCCCTATTCCGACAGCCTGAGACAGAGACATCTTCCTCTTGCGCTGTGCATTCTGGGAGGCCAGTGACCTAAGGGAGATCTCCATGTCCATCTGAGGCACCGTCTTGGTGAGTAAGGAAGCAGGGCAAGGGCTATCTGCTGGCTCCGGGGCTGCCAGGGCTGGGGACGCTGCCAGGGCTGGGGAAGCTGTCAGGCTGCCTGGGGCATTGAAGGGGGAGCCAGGGTAGCTGTGGACCTCCTGGGTGAGGCGCACAGAAGAGCACAGAGAAGAGCACTCTAGGGGTTGGGCTGGGCCACAAGACAGAGGCTCCTCTGGGGACAGGGTGCGCAGCTGGAAGTCATCATCCATGGGGATGTACGGAGCCAACATCTCCAGGTCCAGGTCCTCCATGGCCTACAGGTGGAAACAAGCACATATCAGATCATCTCTTCCCTGAATCAAGTTATATCTCTTCCTCATACCAGCTgatttacattgacattttagtcacttaccggacgctcttatccagagcgacttacagttagtgcattcatcttaagataactAGGTGGGA

Function

NR:

description
hypoxia-inducible factor 1-alpha isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1857864 True 1789 lncRNA 0.47 4 40353882 40356016
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498349 gphb5 coding upstream 251491 40099735 ~ 40102391 (+)
erb2 erb2 coding upstream 397577 39919737 ~ 39956305 (+)
LOC110497825 LOC106599208 coding upstream 507640 39820210 ~ 39846242 (+)
LOC118941473 NA coding upstream 562848 39786957 ~ 39791034 (+)
LOC110497824 LOC106610962 coding upstream 623722 39674038 ~ 39730168 (+)
LOC110497836 trmt5 coding downstream 109891 40465907 ~ 40468723 (+)
LOC110497840 LOC106598809 coding downstream 188900 40544916 ~ 40553190 (+)
LOC110497841 LOC106598867 coding downstream 203263 40559279 ~ 40562442 (+)
LOC110497848 rtn1 coding downstream 351585 40707601 ~ 40757224 (+)
LOC110497851 rd3l coding downstream 425917 40781933 ~ 40785680 (+)
G1623575 NA non-coding upstream 61503 40292103 ~ 40292379 (+)
G1623561 NA non-coding upstream 72248 40281387 ~ 40281634 (+)
G1623544 NA non-coding upstream 80118 40273535 ~ 40273764 (+)
G1623539 NA non-coding upstream 83298 40270186 ~ 40270584 (+)
G1623537 LOC106613263 non-coding upstream 83815 40269853 ~ 40270067 (+)
G1623624 NA non-coding downstream 36584 40392600 ~ 40396042 (+)
G1623623 NA non-coding downstream 59025 40415041 ~ 40415944 (+)
G1623735 NA non-coding downstream 219316 40575332 ~ 40575642 (+)
G1623746 NA non-coding downstream 232771 40588787 ~ 40589060 (+)
G1623753 NA non-coding downstream 240800 40596816 ~ 40597047 (+)
G1622452 LOC106599102 other upstream 291541 40051939 ~ 40062341 (+)
G1622047 LOC106599718 other upstream 1089992 39242203 ~ 39263890 (+)
G1621935 NA other upstream 1333354 38992643 ~ 39020528 (+)
G1621909 NA other upstream 1424699 38928586 ~ 38929183 (+)
commd8 LOC106600549 other upstream 1650367 38686057 ~ 38703559 (+)
plk4 LOC106597351 other downstream 628081 40984051 ~ 40993783 (+)
G1624239 NA other downstream 1088505 41444521 ~ 41446361 (+)
G1624560 NA other downstream 1653945 42009961 ~ 42010330 (+)
tmem260 LOC106593970 other downstream 1668592 41988770 ~ 42029506 (+)
G1624565 LOC100846954 other downstream 1679337 42035353 ~ 42035944 (+)

Expression

G1623578(hif-1a) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1623578(hif-1a) Expression in each Bioproject

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G1623578(hif-1a) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network