G1624936


Basic Information

Item Value
gene id G1624936
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 41050306 ~ 41051596 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1859435
aacaattatacgttttcatgtctttattgaacacaccgtgtaaacattcagtgcagggtggaaaaggTGTATGAAcacttggatttaataactggttgaccctcctttggcagcaataacctcaaccaaacgtttttctgtagttgcagatcatacctgcacaacggtcaggaggaattttagaccgttcctctttacaaaactgtctcagttcagcaatattcttgggatgtctggtgtgaactgctctcttgaggtcatgccacagcatctaaaatcgggttgaggtcaggacactttttttttctgctgttgaagccattctgttgttgatttacttcggTGTTgtgggtcgttgtcctattgcgtcacccaacttctgttgagcttcaattttcagacagatagcctaacattctcctgcacaATGTATTAATTAACTTGGGAATTCGTTTTTCCGTCAACGAtagcaaagatgactgcaagagcacagagcagaatgctcaatgTTAAGAAGAATTGCCCAGGCTGTGAGGCAGCCCCAAGCCATGATGCTCCCTCAACCATAGGTTTTGATgttgctgtgcctttttttttctccacacgtagtgttgtgtgttccttcctgacaactcaactgtagtttcatctttccacagaatattttgccagtagagctgtggaacatccaggtgcacttttgcaaacttcagatgtacagcaatgtttttttttttttttttaaagcagtggcttcttccatggtgtcctcccatgaacaccattcaggtttagtgttttacgtatcgtagactcgtcaacagagatgttaacatgttccagagatttctgtaatctattagctgacactaggattcttcttaacattgagcattctgctctgtgctcttgcagtcagtcatctttgcaggacggccactcctagggagagtggcaacagtgctgaactttctccatttatagactatTTGTCTtatcgtggactgatgaacatcgaggcgtttagagatacttttgtaacccctTTCAGCTTTATTCAAGTCAACAATTcgtaatcttaggtcttctgagatctcttttgttcgaggcatggttcacatcaggcaatgcttcttgtgaatagcaaactcaaattttgtggattttttttttatagggcaaggcagctctcaTCAAcatccaggttagctgactccttactccaattagcttttggagaagtcattagcttaGGTGttcatactttttccaacctacactgtgaatgttt

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1859435 True 1291 lncRNA 0.41 1 41050306 41051596

Neighbor

gene id symbol gene type direction distance location
LOC110497861 LOC106597151 coding downstream 16680 40994003 ~ 41033626 (-)
LOC110497858 chmp3 coding downstream 85079 40960368 ~ 40965227 (-)
LOC110497855 LOC106597482 coding downstream 90760 40950956 ~ 40959546 (-)
LOC110498351 LOC106598081 coding downstream 130151 40858672 ~ 40920155 (-)
LOC110497850 LOC106598245 coding downstream 192589 40811439 ~ 40857717 (-)
LOC110497863 LOC106596965 coding upstream 1270 41052866 ~ 41080347 (-)
LOC110497865 LOC106611002 coding upstream 94568 41144107 ~ 41162883 (-)
LOC110497867 LOC106596550 coding upstream 121437 41173033 ~ 41189809 (-)
LOC110497872 LOC106596263 coding upstream 148249 41199845 ~ 41204084 (-)
LOC110497873 LOC106596382 coding upstream 152638 41204234 ~ 41211621 (-)
G1624954 NA non-coding downstream 80509 40969533 ~ 40969797 (-)
G1624923 NA non-coding downstream 144944 40904638 ~ 40905362 (-)
LOC110498350 NA non-coding downstream 352597 40689096 ~ 40699267 (-)
G1624817 NA non-coding downstream 368895 40681143 ~ 40681411 (-)
LOC110497844 LOC106598722 non-coding downstream 422671 40619452 ~ 40643379 (-)
G1625032 NA non-coding upstream 69255 41120851 ~ 41122447 (-)
G1625067 NA non-coding upstream 145049 41196645 ~ 41196974 (-)
G1625105 NA non-coding upstream 217223 41268819 ~ 41272024 (-)
G1625092 NA non-coding upstream 248541 41300137 ~ 41300971 (-)
G1625118 NA non-coding upstream 257639 41309235 ~ 41309456 (-)
G1624737 NA other downstream 418568 40630578 ~ 40631738 (-)
G1624738 NA other downstream 420098 40629765 ~ 40630208 (-)
LOC110497838 trmt5 other downstream 502684 40467344 ~ 40547622 (-)
G1623175 NA other downstream 1368777 39675439 ~ 39681529 (-)
G1625066 NA other upstream 142837 41194433 ~ 41194759 (-)
G1625428 arf6 other upstream 794659 41846255 ~ 41850433 (-)
G1626105 NA other upstream 1203639 42255235 ~ 42255797 (-)

Expression


Co-expression Network