G1625568 (LOC106593970)


Basic Information

Item Value
gene id G1625568
gene name LOC106593970
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42027586 ~ 42029440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1860136
GAAAAAATCTTTCTTAGAGTATTTTAATCTTTGGAGAACAGAAAAATACTTTTTTCTGAGAGAGCGAGATGTACCATCTGTCCTAGGCCCGTTCTCATCAGCCAGCCCCGTGGACAGAGCAGAGGGCAGGTTGTTTTCTGAGAGGACCCGGAGCAGCACTTCTAGtgctctgccctctctgtccatGCCATTAAAAGTACAATGAGAGcagatgacaggacaggacacaggAGTGGCTGTGGACCAGGTCTCATAGAAATCAGTGGCGCCCAAATATCAAACACACCAGCCCCAAAAGAGTGAAATGGCATGTTCACAGACTGAGAATGTTTACGGTAAATTAGGTAGAAAGTCTATGTGAGAACAGAGGGGAGAAGGAATGAAAGGGAAAGTAGTTAAATATGTAATTAAGTGTACTGAATCACCATGTCTCTCAGACCAGCCTCAAGTGACTGAGTCCATCTACCCAGGAGTGTAGGTTGTGCTGCTGAGGACCTTTGCATGTCTGGATGCAACGTCTCTGAGTGTCTGcgtgactgtggttgtgactcGATGTCTGCGTGACGGAATGTCTCTCTGGAAATGAAAGCGCTCCACTGctcggtgtgtgtgcgtgtgtttttcCTCTCTGCGTATCACTggaggggcacacacacacacacacacacacacacctctaaaaGGGTCCCTGGCATTGTAACATTTCATATTTAATTTAAATCTATGAGGGATTATAGCTCTGTCGtcaaagggagaaaaaaaagctaattgaatccatttgtttttaaaggaccaactcagatggatggatgggcagGGGTGGCGACTGGGAGCCAGGGTCACGCTAAGAGACCAGAGCCCAGGACAGCGACAGCGTGGCAATGCACAAATCTGTCACAGATTAAGAGCCTGCTCTAATCCCCCATTTCTGCACCCAAATTGGGTTTCCCTCAATCTCAGCCCTGCCACCTAATGGGAGAAAAATATAACTAAATCAGCAGGTGGCCACGGCCACATAATCATAACGTTAaaagctgtttgagagaaagagatgcagagagagagagagacagaaaaatgaGACAGGGAAACAGtaaataaaagtgtgtgtgtgggagacttGAACAGCTTGATTGGGTTCAATCCAGGCTGCAAAAATCATGTAATGTCCCCAGTGGAAAACATTGCTGCAGTGTGAGGTGCAGCCTGGTTCCTGTTTGTCTGGACAACCCCACCTCATCACAGAGAGCCCCATCACCAGCACTACCTCCATATTAGGTCCCATGTTGTAGCCAATTCTTTGACAAGGGATGTTTTTCCTGCCCTACTTCATCACAGAATTTTCCAGGGCATCATACATACATTTGTCCATGATGACTGCCGGTAGAGCCCAGTCTACTCTCCACTGTACTGGGCGTGTTCAACCCCTGAGAAAACCCTTCATCCCAACCACCAGAGAAGTTAGAGCACCAGACGCAGCATGTAGGTCAGTCAACATCCCCTGGCTGCCACACTCATTGAGAGgacctctcctcctcagtctccaTGGTGTCCTGCAGTACTTCCTGTATGCCTGCTCTATCTGACACTCCCCTCCCTCACGGGGTGTGTTTCTGCCGGAGCCTGGTCCTCTCTTGCAGCAGGTGGGAGACGGCAGTGTGGATGGCGGGGGCCTGGGAGTCCGTGGGCTCCTTGTCCAGGTACAGGCTGAAGTGCTGGATGCTGCAGGTCAGCAGGCTATCAGGGCTGTGGCCCTGCTTCCCTGAACGCAGGAGCCTCTCGCTGGCCAGGGCCAGGTTTTTATCCCAGTTGGGAGGGTAGTCTGTATG

Function

NR:

description
transmembrane protein 260 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1860136 True 1829 lncRNA 0.50 2 42027586 42029440

Neighbor

gene id symbol gene type direction distance location
vcpkmt vcpkmt coding downstream 156625 41867674 ~ 41870961 (-)
LOC110497882 LOC106595288 coding downstream 195748 41695855 ~ 41831838 (-)
LOC110497880 LOC106595288 coding downstream 196060 41775849 ~ 41831526 (-)
LOC110498590 LOC106595288 coding downstream 262484 41745407 ~ 41765102 (-)
LOC110498352 LOC106595507 coding downstream 332530 41562540 ~ 41695056 (-)
LOC110497889 LOC107085600 coding upstream 23230 42052670 ~ 42062060 (-)
LOC110497892 LOC106593771 coding upstream 115132 42144572 ~ 42158726 (-)
LOC110498354 LOC106593417 coding upstream 142701 42172141 ~ 42173747 (-)
LOC118941476 LOC106611023 coding upstream 155761 42185201 ~ 42189497 (-)
LOC110497894 LOC106593636 coding upstream 160831 42190271 ~ 42213019 (-)
G1625549 NA non-coding downstream 31658 41995455 ~ 41995928 (-)
G1625490 NA non-coding downstream 89122 41938203 ~ 41938464 (-)
G1625439 LOC106594233 non-coding downstream 107634 41919238 ~ 41919952 (-)
G1625380 NA non-coding downstream 343638 41683535 ~ 41683948 (-)
G1625290 NA non-coding downstream 478814 41548435 ~ 41548772 (-)
G1625571 NA non-coding upstream 8177 42037617 ~ 42037905 (-)
G1625575 NA non-coding upstream 14216 42043656 ~ 42043918 (-)
G1625598 NA non-coding upstream 60670 42090110 ~ 42090558 (-)
G1625601 NA non-coding upstream 64177 42093617 ~ 42093857 (-)
G1625603 NA non-coding upstream 66663 42096103 ~ 42096333 (-)
G1625428 arf6 other downstream 177153 41846255 ~ 41850433 (-)
G1625066 NA other downstream 832827 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 865174 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 947487 41052866 ~ 41080347 (-)
LOC110498350 NA other downstream 1331825 40689096 ~ 40699267 (-)
G1626105 NA other upstream 225795 42255235 ~ 42255797 (-)
LOC110498355 atg2b other upstream 436385 42465705 ~ 42480874 (-)
G1626232 LOC106611303 other upstream 611009 42640449 ~ 42641273 (-)
G1626324 NA other upstream 729854 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1379287 43408727 ~ 43409109 (-)

Expression


Co-expression Network