G1626154


Basic Information

Item Value
gene id G1626154
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42370814 ~ 42373916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1860812
GCTTTCTTTGGGTTCAGGAAAAACCAGGAACCACCATTTCTGCATGATGACAAACATAACTAACAATAACTTATCATAACATTGTAGGAAGGGCCAAGACACCAGAGAAACAAGTTTCAAAGGAATCTACAAAGAGCTTGGCTATATGATCACAGAATACAACAGTTAGAAACTGCAGACAGAGAGTGACACCCACAACAAGGCACCTTAAGCTACAATCCAAATGATTTCATTGgaaggaaaaaaaaaataaaaaaaataaaatgagacTAGAAAATCCAGTCAGCACATAGAGTCAACATCATTAGCTCAGTGGTCTGTGGAGCACACTGTTTGTCAGATCTGGGTATTTAAATGACTTTCAAATGCACTTTGAAGTAGGTATTTAGGCGTTTTTGTTATGAAAATACAAGCAGTTGAATATTAGAATGTATTTTGGGAAATACATTTGtaaagtatttgaaaatagtcaaatacagaattgtattttcaaatacaaatattttaaTACCATGCATTTGAACCTGGTCCTAGGGGTGTTATTTTAATTTGACATTTTTAATTGTTTAAAATAAAAAAGCAATTTATAGgaaattatttgaaaatactttaAATAGAAGCTGACTTTGGCCACATTTTTAAATACTCAAATTACACTGAAAATACGTTTTTCATAAGTTATTTAAACCCTGCTTGTTTATTGGCTGAGGGAACTATTCATAGGAAGATGGCTGCTCACACAAATGATGGGAGGAAGATAATAGCTGGTTATGGGTGGCATTTGATAGAACTATGGCCATACGctactctgtgtgtgtttgttaattTAAGTCTGTCTACATCTTTTCCCTGGTTTTTAGTTCAGTCCATGCAGCATATTTCAGGCCATGCTGGATTGCTAGACGAAAGAGCGATTTTCTTCAAGGCACAGCAAGAGAGCACGATTACTAACCACAATCAGTTTACATTCAGTTTGGCAAGGAAACCTCTCCTCCGAGCAGCAAAACACTTGCAATACAACACTAGCAAAGGTTACTGTATGACTGTCAGCTGAGTCTTATGCAGCATTAGAGAAAGCCGTTTAGTTTGTTATACTCCATGTCCACCCTCAATGTACAGACAAATCCTCTCTCTTATACAGCATTCTCAACATGCAGTGGAGAAGACTGGTTTGGACTACTGAAACCACGATGCAATAGAGAACGATTAGTATTTTTTCTTGACTACTTTTTGCTGCCGGACATTTATGCAAAACATAAAACCAAAGTAAATTGGAGATCATGTTTTGAAATGGTtgactacctggacttgtccaacaAGAAGACAGCTTTTTCCCAGTCATATTTATAAACAATAAAGGGATGGCACCATAAATACATTGTTATTAAACAATAAGCAGCCTGCCCCTCGCCCTTCAGCACAATAACATCACATACAACGGGCAACTACAGAATAGCAAAAATAATaaccttgacaaaaaaaaaaatacaataacatCAGGTCCCATTGGGTTCCTTGTGCCTTCTCTTCCATAGGGAGTGTTAGAGCTCTGAGATCCGCTCTGAGATCCACTCTGCCCTCCATCCGTCTGTCCTGTTCTCTCACTGCAGATGGCTTGATTACAACCCGCAACCCTCTGCCTCACGGAGCTCTACCACACCAGAGCCAAGACCACTCTGTCTCGTAGGGTAGTTGGTGAAATTCACCCCTACTCCTGCCCCAGTGTCCTTCCTCGCTAGTTAATTCATTCCATGCAACTTAGAGGGAAGAAAGGGAGAACATTATGAAGCAGTAAGTCAGAAAATGACAGCACTTTTGTTTGAAGTATCCTCCGTATGGTTCATTTATGATGACAGCTTTGAGAGATGTTGTGGTGTGGTCACTTTGACTTCTGTACACCGAGGGAGAGAAGGCCACTTGCATCCTTTCTCCACATCCCCACCACAGGGCTGAGGAAGAAATTAATTCAGCCTTGGGTTCCAAAGAACCTCCAAAGACACAATCCAAATGGTCTCACAAACATGGGTCCAGTCAGAGGGGCTGAGGCAGTTGGATGTGATTCTGAGGTTAAAAGGTAAATATGCAGCATTGTGGCATCTTTCGCTCCCTTATATCACAGGTGTAGGTCACTGGTTACCCACTGGGCTGTCCATGGCGTAGTAAGGGTCTGGGGGCTCTTGGAGCTCTGTCTCAACGGTTTCAacctggttctcctcctcctcttggtcCTGGGAGCTGGCCATGGTCCCGTAGCTCTGGTGAGCTGGGGAGGGCATCGGGGTCAGGCCTAGCTCCGGCTCCAGCAACACAGATGACTTGTCAGGCTGTTTCCTAAGGCATAGGCCAAGGAGGGAGAAGGCAAGGCAGGAGAGCAGGGACACAAAGGTGAAGAGGG

Function

NR:

description
calcium permeable stress-gated cation channel 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1860812 True 2395 lncRNA 0.42 2 42370814 42373916

Neighbor

gene id symbol gene type direction distance location
LOC110497897 LOC106593433 coding downstream 30992 42319096 ~ 42339822 (-)
LOC110497894 LOC106593636 coding downstream 157795 42190271 ~ 42213019 (-)
LOC118941476 LOC106611023 coding downstream 181317 42185201 ~ 42189497 (-)
LOC110498354 LOC106593417 coding downstream 197067 42172141 ~ 42173747 (-)
LOC110497892 LOC106593771 coding downstream 212088 42144572 ~ 42158726 (-)
LOC110497901 entpd5 coding upstream 26000 42399916 ~ 42414821 (-)
LOC110497902 aldh6a1 coding upstream 58068 42431984 ~ 42444258 (-)
LOC110497906 NA coding upstream 74461 42448377 ~ 42451017 (-)
LOC110497908 tmed8 coding upstream 81539 42455455 ~ 42459369 (-)
noxred1 noxred1 coding upstream 85535 42459451 ~ 42465605 (-)
G1626113 NA non-coding downstream 103686 42266920 ~ 42267128 (-)
G1626112 NA non-coding downstream 103954 42266369 ~ 42266860 (-)
G1626111 NA non-coding downstream 106032 42264571 ~ 42264782 (-)
G1626107 NA non-coding downstream 113337 42257226 ~ 42257477 (-)
LOC118941477 NA non-coding upstream 74 42367530 ~ 42375160 (-)
G1626158 NA non-coding upstream 3123 42377039 ~ 42377273 (-)
G1626160 NA non-coding upstream 4738 42378654 ~ 42380435 (-)
G1626190 NA non-coding upstream 71697 42445613 ~ 42448304 (-)
LOC110498355 atg2b non-coding upstream 102202 42465705 ~ 42480874 (-)
G1626105 NA other downstream 115017 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 520381 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1176055 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1208402 41144107 ~ 41162883 (-)
LOC110497863 LOC106596965 other downstream 1290715 41052866 ~ 41080347 (-)
G1626232 LOC106611303 other upstream 266533 42640449 ~ 42641273 (-)
G1626324 NA other upstream 385378 42759294 ~ 42838434 (-)
G1627068 NA other upstream 1034811 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3629849 46003765 ~ 46008718 (-)

Expression


Co-expression Network