G1625828 (LOC106611036)


Basic Information

Item Value
gene id G1625828
gene name LOC106611036
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42497955 ~ 42498451 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1860439
AGCAGGATAATGAACTCTCCATTCTTCATGCCAATGGCCACCATGTCCCCCTCGGGGCTGTAGGCCACCGTACGAGCTGGGTGTCCCAGGTTCACCTTGTTTAGCATCTTCTTCTCTGGGATGTCCCACAGCCTCACAGTgccatcctctgcagcagaaagGAACACGTCCCGTGTGGGATGGGTGCCAACACCCCAGATCGGACCATCCATGTGGCCGTTCACCAGGATGTTGCACGCTGCATTCTTTTCCCCCACCTCAATGATCTCAGCATTCCGGGTTCCTACCAGAATTTTACCCTAGAACAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1860439 True 309 lncRNA 0.55 2 42497955 42498451

Neighbor

gene id symbol gene type direction distance location
isca2 LOC106591720 coding upstream 3884 42492218 ~ 42494071 (+)
LOC110497909 gskip coding upstream 13224 42481002 ~ 42484731 (+)
gstz1 gstz1 coding upstream 49664 42444439 ~ 42448291 (+)
LOC110497904 bbof1 coding upstream 66043 42421753 ~ 42431912 (+)
LOC110497900 NA coding upstream 99111 42388876 ~ 42398844 (+)
LOC110497912 LOC106591546 coding downstream 65867 42564318 ~ 42570994 (+)
LOC110497914 nek9 coding downstream 79333 42577784 ~ 42588877 (+)
LOC110497916 LOC106591288 coding downstream 111630 42610081 ~ 42619496 (+)
LOC110497917 atf3 coding downstream 122119 42620570 ~ 42628100 (+)
LOC110497918 LOC106591116 coding downstream 137994 42636445 ~ 42666725 (+)
G1625813 NA non-coding upstream 673 42495653 ~ 42497282 (+)
G1625823 NA non-coding upstream 22162 42475532 ~ 42475793 (+)
G1625822 NA non-coding upstream 22707 42475040 ~ 42475248 (+)
LOC110497898 tmem63c non-coding upstream 122782 42340967 ~ 42375186 (+)
G1625761 NA non-coding upstream 160242 42337498 ~ 42337713 (+)
G1625888 NA non-coding downstream 90851 42589302 ~ 42589684 (+)
G1625915 NA non-coding downstream 140080 42638531 ~ 42638756 (+)
G1625918 NA non-coding downstream 143526 42641977 ~ 42642356 (+)
G1625919 NA non-coding downstream 144127 42642578 ~ 42643263 (+)
G1625923 NA non-coding downstream 151394 42649845 ~ 42650111 (+)
G1625710 NA other upstream 246384 42250731 ~ 42251571 (+)
G1624524 NA other upstream 460837 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 462011 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 468449 41988770 ~ 42029506 (+)
G1624560 NA other upstream 487625 42009961 ~ 42010330 (+)
LOC110497931 LOC106589425 other downstream 813389 43279273 ~ 43440028 (+)
G1627319 NA other downstream 1316275 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 1915871 44414322 ~ 44448672 (+)
G1628486 NA other downstream 2184911 44683362 ~ 44748925 (+)
G1628488 NA other downstream 2189931 44688382 ~ 44747446 (+)

Expression


Co-expression Network