G1626231


Basic Information

Item Value
gene id G1626231
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42586935 ~ 42588868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1860905
gttttttattttttacatgaagCATAAAACAAATGTTCCTCTGTGAATGGTGGAAAGGTAGACAACTGTAACATCTTACACCCACTCAATTGCATAGGGTCAGATAAGCCATTAAAACAATGGATTGCAAAAATAAACACAGTATAGGCATAATATCAGCATCAAACAAACTGTATAAAATGCATATCCTATTCTAAAGGCACattttgttttatattttgtgCACAATTCATCACAACACAATCTTTGGTTTAAAGAGTATGCAAAAGCACTAGGGAATAGGGACATCTTTTTCTCTTGCATGGACAAAGAAAATTCCACCAGTGTTGTACTGTATCAATAAACTGCAAACTAACCAAAATAGTTGCAAGCTTATAAGCCATTGGTAAAGGACACTTAAAACCTTACATACACCAAATCTGAATATTACACTTTTCACAAATAGTGTAAAAAATAATGATTAAATGAATACTCAAAAACAGGAAAAATGTAATAGAAAAAAAACACAGTATTACCATGAAGTTTACGAAGACAAGCTTTTCTCAAATTCTAGAACTGTTCTCATGACATTAAGTATTACAGAAGGAACATTGCAATTTGATGGTTAATTTCCTCCACTTTAAATACTAGTTCTAACAAATTCAAGGTTATCATCTTAAGGCAATAAAAAGACAAGTGATTGTCTATAATGAATCAGTAGTTTGAAAAGTGAACCTCACATTTCACATGGCATTTTTGCAGATACAGTATAGCAAGCTGTTCATGAAAGACACAACATTGTAAATACTTAAAATGTTAAAACTAAACACATCTTTGGTAAATTTTATATAAAATATACTATATCTGGTATATCTTTCTAAGGCTATATTCGATATGCCTTTtagttagtatttagtattttgTTTAGAACAGCATCACATATGAAGAACATTGGTAGGTTATCAAAAATAGGGCTCAGGGCTTTCCAGAGGAATGAGCAAAACACGCAGTACTTTAAATTCACATTGGTTTTAATAACCACAAGAAATAACTGCAAGATAAAACAggaggatatatatatatcaaaaacAATGGAAGAACACCAAACGATCTTCTCTCTACAGTAAGCTGTGCCCATTTGTGATCATCaattaaaatgtgggacaaaacGCAATCCTAGACCTCAGTTGACAGTAGTCAGTCAGTGACAACATTATCATTACTACCAAAGTACTTACTCATATTTCACATTAGCCTACATAACACTGCAAGAAGTTGGTTGCTTAATGTTGAATCAAGCCAAGATGTCAGTCTGTCTATGTCCAGATCACAGCAGATCAGTTGCTGTAGGCCTTTTCCTGTCACTGTCACTTAATTAGAACTTACAACATGAAAGTGTTCATACAGGGTATCTCTCATGTATATTTATACGTTATCATGCAGATTGGAGTATATCGAAGAAATATGATGTAACGCAATGTGAAAAGAAGCGAGACCTCTCTTGCAAGTGGATGAGGTCAGTGGGCATCCATTATTCAGCTAGCTGTTCCTAGTTAAGGAGAACACAATTGACTCTCAGACTATTCATCCCTTTAGTAATTTCTTAAACCTACTTCTCCCTGCCGTTCACCAATGGAACTGGCTTGCTAACATATTCCTCTTCTCAATATGGCCTAGCCACTCCATCTACAGGACCTGTTTGGATGGACTTAACTGCACAGAGCCACCACCACTCACTGCATAGTATAGCACAGATTCCGTCTTTTTTTCTCACGGATTTGCCCCATCAGATCTGTCCCCGTCATGATTGGAGGCTCCTCCCATTCCCTCCACAGGCCTGTGACCGGATTGGTGGTTGCAGTTATTTTCAGTTCCTGCCTCTCGCAAGGTCAGACGGTTGATTGCTGTCCAGAGTCTCTCGTTCTCTTT

Function

NR:

description
serine/threonine-protein kinase Nek9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1860905 True 1908 lncRNA 0.36 2 42586935 42588868

Neighbor

gene id symbol gene type direction distance location
LOC110497913 NA coding downstream 15478 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 24966 42494458 ~ 42561969 (-)
npc2 npc2 coding downstream 94873 42489857 ~ 42492062 (-)
LOC110498355 atg2b coding downstream 106061 42465705 ~ 42480874 (-)
noxred1 noxred1 coding downstream 121330 42459451 ~ 42465605 (-)
LOC110497915 LOC106591465 coding upstream 12890 42601758 ~ 42604764 (-)
erg28 LOC106591002 coding upstream 80168 42669036 ~ 42671081 (-)
tgfb3 LOC106590795 coding upstream 176009 42764877 ~ 42786064 (-)
LOC110498358 LOC106590063 coding upstream 511357 43100225 ~ 43110498 (-)
LOC110497926 LOC106589845 coding upstream 536566 43125434 ~ 43135492 (-)
G1626254 NA non-coding downstream 21533 42564355 ~ 42565402 (-)
G1626212 NA non-coding downstream 99961 42486722 ~ 42486974 (-)
G1626190 NA non-coding downstream 138631 42445613 ~ 42448304 (-)
G1626160 NA non-coding downstream 206500 42378654 ~ 42380435 (-)
G1626267 NA non-coding upstream 2114 42590982 ~ 42591311 (-)
G1626288 NA non-coding upstream 58721 42647589 ~ 42647792 (-)
G1626291 NA non-coding upstream 61262 42650130 ~ 42650687 (-)
G1626294 NA non-coding upstream 65641 42654509 ~ 42655253 (-)
G1626296 NA non-coding upstream 67487 42656355 ~ 42657840 (-)
G1626105 NA other downstream 331138 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 736502 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1392176 41194433 ~ 41194759 (-)
LOC110497865 LOC106611002 other downstream 1424523 41144107 ~ 41162883 (-)
G1626232 LOC106611303 other upstream 51581 42640449 ~ 42641273 (-)
G1626324 NA other upstream 170426 42759294 ~ 42838434 (-)
G1627068 NA other upstream 819859 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3414897 46003765 ~ 46008718 (-)
G1631005 NA other upstream 4030339 46619207 ~ 46629506 (-)

Expression


Co-expression Network