G1625935



Basic Information


Item Value
gene id G1625935
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42665015 ~ 42665526 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1860575
cTAACATTGTGTTCATTTGcaagtagaaatgtgttcaacatccactgaagtagcttgCAAATTTAcaagatagctacagtagttgccatGGTAACAAAACAAAGAGACTTGCTagcttatttttgtatttatgttactcaagtaaaagtgaaagtcacccagtaaaatactgcttgagtaaaagtctaaaagtatttggttataaacatatttaagtatcaaaagtaaatgtaattgctaaaatatacttaagaatcaaaagtaaaagtataaatctattcaaattccttatattaagcaaagcagatggcaccattttcttgtttataAAATTGacagatagtcaggggcacactccaacactcagaaataatttacacattatgcatttgtgtttagtgagtccaccagatcagaggcagtagggatggccacgtgttctcttgataagtgtgtgaattggaccattttcctgtcctgccaagcattcaaaatgtaagaagtacttttgg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1860575 True 512 lncRNA 0.33 1 42665015 42665526

Neighbor


gene id symbol gene type direction distance location
LOC110497917 atf3 coding upstream 36915 42620570 ~ 42628100 (+)
LOC110497916 LOC106591288 coding upstream 45519 42610081 ~ 42619496 (+)
LOC110497914 nek9 coding upstream 76138 42577784 ~ 42588877 (+)
LOC110497912 LOC106591546 coding upstream 94021 42564318 ~ 42570994 (+)
isca2 LOC106591720 coding upstream 170944 42492218 ~ 42494071 (+)
ttll5 ttll5 coding downstream 5714 42671240 ~ 42765750 (+)
LOC110497923 LOC106590872 coding downstream 125429 42790955 ~ 42811478 (+)
LOC110498356 NA coding downstream 197126 42862652 ~ 42877342 (+)
LOC110497924 esrrb coding downstream 316719 42982245 ~ 43039659 (+)
LOC110497925 LOC106590001 coding downstream 446176 43111702 ~ 43125556 (+)
G1625934 NA non-coding upstream 22 42664764 ~ 42664993 (+)
G1625929 NA non-coding upstream 8806 42655893 ~ 42656209 (+)
G1625923 NA non-coding upstream 14904 42649845 ~ 42650111 (+)
G1625919 NA non-coding upstream 21752 42642578 ~ 42643263 (+)
G1625918 NA non-coding upstream 22659 42641977 ~ 42642356 (+)
G1625910 NA non-coding downstream 1994 42667520 ~ 42668834 (+)
G1625943 NA non-coding downstream 33104 42698630 ~ 42698854 (+)
G1626423 NA non-coding downstream 185360 42850886 ~ 42851160 (+)
G1626430 NA non-coding downstream 189813 42855339 ~ 42855558 (+)
G1625710 NA other upstream 413444 42250731 ~ 42251571 (+)
G1624524 NA other upstream 627897 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 629071 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 635509 41988770 ~ 42029506 (+)
G1624560 NA other upstream 654685 42009961 ~ 42010330 (+)
LOC110497931 LOC106589425 other downstream 646314 43279273 ~ 43440028 (+)
G1627319 NA other downstream 1149200 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 1748796 44414322 ~ 44448672 (+)
G1628486 NA other downstream 2017836 44683362 ~ 44748925 (+)
G1628488 NA other downstream 2022856 44688382 ~ 44747446 (+)

Expression



Co-expression Network