G1626326 (ttll5)


Basic Information

Item Value
gene id G1626326
gene name ttll5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42710367 ~ 42712082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1861012
GCCACAAACACCTCAGCACATTATGACCCAAGTGGCTCCGATGAGTAGCATAATGCAGATAAACATAACACAAGGGTCCAGGTTCCCTTTTCCATACAGTCATTCCCCGGGGCAATGGTATCAGACAGTTGTATTACCATTTGCTCATTGTCCTTCTCTGGCCAGGCGGACCCTGCTGGAGGATGTGGAGCAGATTGACTTTGGGTTTGGTAATGGCAGTGTTGCATCGGGCCGGTTCTGCTGAGGACAGGGCCTCATTGTGGAACCGCTTCAGTGAGGTGGGCACACTGTCAGTCTGCACCACTAACGAACCCAGGGCTTTCTtattcttctcctcttcctcctgaaccctctcctccccctcttcaacATCCTCCTCGTCACTGGTCCCAGTAGGGGAGGCCTTGCGAC

Function

symbol description
ttll5 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in cone-rod dystrophy 19. Orthologous to human TTLL5 (tubulin tyrosine ligase like 5).

NR:

description
tubulin polyglutamylase TTLL5 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1861012 True 411 lncRNA 0.53 2 42710367 42712082

Neighbor

gene id symbol gene type direction distance location
erg28 LOC106591002 coding downstream 39286 42669036 ~ 42671081 (-)
LOC110497915 LOC106591465 coding downstream 105603 42601758 ~ 42604764 (-)
LOC110497913 NA coding downstream 138910 42570828 ~ 42571457 (-)
eml5 LOC106591625 coding downstream 148398 42494458 ~ 42561969 (-)
npc2 npc2 coding downstream 218305 42489857 ~ 42492062 (-)
tgfb3 LOC106590795 coding upstream 52795 42764877 ~ 42786064 (-)
LOC110498358 LOC106590063 coding upstream 388143 43100225 ~ 43110498 (-)
LOC110497926 LOC106589845 coding upstream 413352 43125434 ~ 43135492 (-)
LOC110498359 LOC106599825 coding upstream 424118 43136200 ~ 43139430 (-)
LOC110497927 lrrc74a coding upstream 429440 43141522 ~ 43148464 (-)
G1626321 NA non-coding downstream 13412 42696693 ~ 42696955 (-)
G1626320 NA non-coding downstream 14323 42695797 ~ 42696044 (-)
G1626316 NA non-coding downstream 18757 42691382 ~ 42691610 (-)
G1626312 NA non-coding downstream 22682 42687419 ~ 42687685 (-)
G1626310 NA non-coding downstream 26289 42683830 ~ 42684078 (-)
G1626431 NA non-coding upstream 143745 42855827 ~ 42856073 (-)
G1626435 NA non-coding upstream 147332 42859414 ~ 42859886 (-)
G1626448 NA non-coding upstream 156095 42868177 ~ 42868408 (-)
G1626477 NA non-coding upstream 177628 42889710 ~ 42889950 (-)
G1626486 NA non-coding upstream 186072 42898154 ~ 42898366 (-)
G1626232 LOC106611303 other downstream 69094 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 239665 42465705 ~ 42480874 (-)
G1626105 NA other downstream 454570 42255235 ~ 42255797 (-)
G1625428 arf6 other downstream 859934 41846255 ~ 41850433 (-)
G1625066 NA other downstream 1515608 41194433 ~ 41194759 (-)
G1626324 NA other upstream 47212 42759294 ~ 42838434 (-)
G1627068 NA other upstream 696645 43408727 ~ 43409109 (-)
LOC110498001 NA other upstream 3291683 46003765 ~ 46008718 (-)
G1631005 NA other upstream 3907125 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 4118252 46830334 ~ 46830650 (-)

Expression


Co-expression Network