G1626430


Basic Information

Item Value
gene id G1626430
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 42855339 ~ 42855558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1861122
CCCATGGGCCCAAAGGGAAATGTGCAGTTATTAAGAGGAAGATGAGAGAGATTAAATGGCCTTTGTGCTCATTTTCACAGAgacttttctttttttcattATTAGGCCAGCCTTCATCTGAGAGATGAAAGGAGTGGTAAATGACTTTTCACTTCATTCAGCCACACATTGGTTTTGAGGAAAACTTCCATTACTGGCACTTGCCAGACATGATAAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1861122 True 220 lncRNA 0.40 1 42855339 42855558

Neighbor

gene id symbol gene type direction distance location
LOC110497923 LOC106590872 coding upstream 43861 42790955 ~ 42811478 (+)
ttll5 ttll5 coding upstream 89589 42671240 ~ 42765750 (+)
LOC110497918 LOC106591116 coding upstream 188614 42636445 ~ 42666725 (+)
LOC110497917 atf3 coding upstream 227239 42620570 ~ 42628100 (+)
LOC110497916 LOC106591288 coding upstream 235843 42610081 ~ 42619496 (+)
LOC110498356 NA coding downstream 7094 42862652 ~ 42877342 (+)
LOC110497924 esrrb coding downstream 126687 42982245 ~ 43039659 (+)
LOC110497925 LOC106590001 coding downstream 256144 43111702 ~ 43125556 (+)
LOC110498360 LOC106589621 coding downstream 319220 43174778 ~ 43210365 (+)
LOC110497931 LOC106589425 coding downstream 423715 43279273 ~ 43440028 (+)
G1626423 NA non-coding upstream 4179 42850886 ~ 42851160 (+)
G1625943 NA non-coding upstream 156485 42698630 ~ 42698854 (+)
G1625910 NA non-coding upstream 186505 42667520 ~ 42668834 (+)
G1625935 NA non-coding upstream 189813 42665015 ~ 42665526 (+)
G1626434 NA non-coding downstream 4128 42859686 ~ 42859904 (+)
G1626440 NA non-coding downstream 7795 42863353 ~ 42863580 (+)
G1626464 NA non-coding downstream 24693 42880251 ~ 42881091 (+)
G1626484 NA non-coding downstream 40016 42895574 ~ 42895786 (+)
G1625710 NA other upstream 603768 42250731 ~ 42251571 (+)
G1624524 NA other upstream 818221 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 819395 42035353 ~ 42035944 (+)
tmem260 LOC106593970 other upstream 825833 41988770 ~ 42029506 (+)
G1624560 NA other upstream 845009 42009961 ~ 42010330 (+)
G1627319 NA other downstream 959168 43814593 ~ 43816501 (+)
G1628073 LOC106610840 other downstream 1558764 44414322 ~ 44448672 (+)
G1628486 NA other downstream 1827804 44683362 ~ 44748925 (+)
G1628488 NA other downstream 1832824 44688382 ~ 44747446 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G204810 NA non-coding NC_053131.1 CM020928.1 21134100 ~ 21136563 (-)