G1627649


Basic Information

Item Value
gene id G1627649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 43736321 ~ 43750375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1862462
acatacgATGgtcaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtacgatctttggccccatgtgcagttgcaaaccgtagtctggcttttttatggctgttttggagcagtggcttcttccttgctgagcggcctttcaggttatgtcgatataggattattttttactgtggatgtagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgctgttgttctgggattgatttgcacttttcgcaccaaagtatgttcatttataggagacagaatgcgtctccttcctgagcagtatgacggctgcgtgttcccatggtgtttatacttgcgtactattgtttgtacagatgaacgtggtaacttcaggcatttggaaatggctcccaaggatgaaccagacttgtggaggtctacaatttattttctgaggtcttggctgatttcttttgattttcccatgacgtcaagcaaagaggcactgcgtttgaaggtagatcttgaaatacatccacaggtacacctccaattgactcaaatgatgtcaattagcctatcaaaagcttctaaagacatgacataattttctggaattttccaagctgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactggaattgtgattcagtgaataATAAGCGAAATAACAATTgctggaaatattacttgtgtcatgcacaaagtagatgtcgtaaCCGACTTGACAAATCTACagttttgttaacaagacatttgtggagtggttgaaaaacaagttttaatgactccaacctacgtgtatgtaaacttccgactttaactgtatatacatatacagtacattctgccCACACTAGGCAGTCAGCAATAAGGACAGCAGGAGGACACTTTTATGTTCTGTATTTAACAAATCTCTTTTTTTATATCTTTATCTTTGTCTAAATCTGTATCATATTTTTTTCTTATACAGTACACCATATAATCCAATTTACTGATGGAAACTTAAAACCTATTATTTTTGCAGTGATTGGGAATATATTTTTGTTTGCCCATAAATCTAAGGTATTGTAATTGTTATTATAGAAGCGACTTTGAGGGAAATTCTCCATGATTTTATTACATTCCAGGAGTAGGCATAAGGGCTTGATAGACAATCTACAATTAATCATTGCATGTTTCATCAAATTGTGTTTGTTTAGAATTCATGCTATGGTTGGATTCTTATTTTTTGAAAGCATGAAGTCCAATTGAAGTCATAGGCCTATTTTTCAAAGGAGACCTGGCCAACACAGACCATCATACACTCAAGAGAACACCTACCATTTGATTAAATCAATATAGACAGCTTTAAAGCTCGAAAACCCTGTCACTTATGAAAAATCTCAATAATGTTGTCTCAGAATCAGTGATTTCAGCCTTATTTAGTATTTTACACAGCACCAAGTTTcgagttttaatgtcacatgcacaagtacagtgaaatgcctttcttgcaaactcaaaacccaacaatgtaATGATCAATAACAATGTGATACGTGGTGTTTCTGTATTATCCTGCACCTATTCAAGCAGATACATGCCAAATAAATGCCACATTAGACCAGTCACAGAGATATTTAAGTGACATTCACATGCCTTACAGGCCCCTAATAAAATAGCCCTGCATCACTACCACTTTGGAATGTCACCAGTGTCATCTAATGGAGACTAAACACCATGCACCTCTATGGGCCATGGTGGCCAGGCATGCCGACCAGGAGGACTGTGGCAGGAATATTTATTTGGATGTTGAAATATGTCATCACCTCACAATCAGAAGGATCCTATATCGCTTAACAGACCAAGAGAAGCATGTTTCATTTAGTGCTAGCCTTTTTGTTGCATTCATGTCAATGTAAACCATGACTTACATGCTCAGTCATTACAGAGATATGTGTATGTATTATTCCTCATGTCATGTTGTTGCAAGCCATTGTTTTATTTGCCAAACAGTGTGTATGCTTGTTAGGGGAAATGCTCTGTGAAATTAAGTTTAGGGAGTCTGAGCTGGGGAGAAAAGGTTACGTGCACAGCCAACCAGCAAGCTGCttggttcttcttcttcttcaccttcttctATCTTCAAACACAACCAAAAGGGAAATTACCTCAATCTCCACCACTGAACAGAACAACGAACATCTCTGCTGAAAGGACATAAaccaacaggatgcacctgactgATATCACATCCATCCCTGGAACTGGAAGATACATGATTCATCTGAAGGCCTCTGCTGCATCGCTCTTCTACATTCAAGTCCTGAGATAGAGGAGGGTATCATTCACAGCACAACAGCTCCCTCGTGTGGTAAGGGGGGCATATGATCAACTGCCAGAGTCAATATTACTAAAGTCAAATACTGAGAGAATTACAGTACTTCAAATTAAATTAGAGTTGCTGCCATGCACTGTACAGGTTGATATTTATATGATTATCATAAACTAAAACCTCTTGACTATAAGATAGAAATGCTTAATTTATtgagggatagttcacccaaattacaaaatgacatattGGCTTCTTTACCCTATAAGCAGTCTATAGTTGAGTTTCCCTGGCAGTTTCCTGATGCTAACATTTTAGGCGTTGTAGTACAAATCCCACatgttgacatttattgtcaCGAATCTTGCCCTGGAAGCAGAATGGAACACTTTCTGTTAGCTAGGCCAGCATTTGAAAACAGTGCTAACactgccagggaaactaaaccaaagcatggatttctgtcataccttgtccatggACTGCTTACAGGGCAAGGAAACCAAAGTCTAATTTTGTAATTTGTGTCAAATATCCCTTTAAAGAATATTGTCTGCACAAACACaatagcactgtgtgtgtgtacagagtgCATTGTATATAAATTGGCTATATAGATTTCCATTATCTAAAGGCACATGTTATGGTATGGGCACATTACTATGCATGTAACATAACCAGGAcatttgtgcttctagtttctcAAATCAGCAAAATGACTATTAGCACTCTAAAAGACCCATGCACCTAATATCTTGTGGGGACTAAAAAATAAAACCGTGGGACCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1862462 True 3149 lncRNA 0.38 2 43736321 43750375

Neighbor

gene id symbol gene type direction distance location
LOC110497935 LOC106589171 coding downstream 153958 43557223 ~ 43582363 (-)
LOC110497934 LOC106589256 coding downstream 209844 43511968 ~ 43526477 (-)
LOC110497930 LOC106589732 coding downstream 561466 43171743 ~ 43174855 (-)
LOC110497929 LOC106589786 coding downstream 564873 43162498 ~ 43171448 (-)
LOC110497927 lrrc74a coding downstream 587857 43141522 ~ 43148464 (-)
LOC110497941 LOC106588489 coding upstream 64336 43814711 ~ 43890059 (-)
gpx2 gpx2 coding upstream 156028 43906403 ~ 43907894 (-)
LOC110497943 LOC106588404 coding upstream 160812 43911187 ~ 43916292 (-)
LOC110497944 LOC106588122 coding upstream 168295 43918670 ~ 43923050 (-)
LOC110497946 LOC106587737 coding upstream 181098 43931473 ~ 43941320 (-)
G1627568 NA non-coding downstream 85940 43650177 ~ 43650381 (-)
G1627567 NA non-coding downstream 86318 43649636 ~ 43650003 (-)
G1627566 NA non-coding downstream 86920 43649137 ~ 43649401 (-)
G1627268 NA non-coding downstream 113898 43622220 ~ 43622423 (-)
G1627251 NA non-coding downstream 119410 43616671 ~ 43616911 (-)
G1627682 NA non-coding upstream 41387 43791762 ~ 43792529 (-)
G1627694 NA non-coding upstream 62495 43812870 ~ 43813094 (-)
G1627696 NA non-coding upstream 70098 43820473 ~ 43820704 (-)
G1627697 NA non-coding upstream 70344 43820719 ~ 43820934 (-)
G1627068 NA other downstream 327212 43408727 ~ 43409109 (-)
G1626324 NA other downstream 897887 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 1095048 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 1265619 42465705 ~ 42480874 (-)
G1626105 NA other downstream 1480524 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 2253390 46003765 ~ 46008718 (-)
G1631005 NA other upstream 2868832 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 3079959 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 4165920 47916295 ~ 47980466 (-)
G1632228 NA other upstream 4218139 47968514 ~ 47970332 (-)

Expression


Co-expression Network