G1627830


Basic Information

Item Value
gene id G1627830
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44144817 ~ 44159762 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1862672
GTATGAAAGGCTTGGGTGGTATCCAGATTATCTACAAAGACTATTGACAGCAACACAAAGGACTAGGAGCAACCGTGGGATCCTCAGGCCTTTTCATTGCATTATGCAATATAGCCATGAAAAGGTGCATTATGACCATTTTAATTAATGAACCCCATAGAACATACCTCACGTTTTACCTATTTACTCACGTTTGCTATTCAAAGAGCACTAAATATAAGGGTTTCACTCAAGAAACACAACCAACAAGCGAGAGAAATGTAACATTGAAAAACATTTGGATAATGGTCAGCTGTTGTAATAAAGGAAAAGTTGTTGGATTACTCTGTTCAAGCCGAGTGCTGGGACGTTAGTCTGTCTGAGAGGACAGATTTGTGACGGTAACAACTTTAGAGCACAGTTCTGTTGTGTAAAATGGAGACCATACCGTATAGATATAATAGATCCTCCAGACCTGGCGCTGGCGGTTTTGTGTCATTCCGTCCCAGGCGGACATAACTCTCAAACTGGGTGCAGTCGTCTTTGTCGTTGTTAGAGCAGTACATGGGTCTGTGTCCCATAGTGATGATCCAGGGGCGCTCTGCTCGGTTCTCTGGCTTGTTGGCCTCCTCAAGGTCCTTTTTAAGCCACTCGTACTGCTTGAAGATGAGGTCCACACCATAATCAAGAAAGAAGTAGATCTCAGTGGAGAGAGAAATGATATGGGCTGATCCTACATTCCAGCTGTACCATAGACTCTCAGTCTGTCCTGGCATGCTGAAGCGGTTCCTGTAGTTGGAAAAGTTGTATTCAGCCTCGTGGTTCCCAGGACAGGTCATATAGGGCACGTAGGCAGCTATGGACTGGATCTGACGCATGAACTCATCTCCAATCCTGCCGTTGTCCTCATGCATGTCATATGCAAAGTCCCCAACGTGTAGGATGACATCATACATCCCGACCTGGGTCTCCTTTTGTAGTCTGGCCAGAGACTGAGGGTTCTCATTGCCCATGTCCCCATAGACAGCAAACCTGGGACTCCAGCTAGTGCTCTCATTCAGAGCAGTAAAGGAGAATACATCACTCCAGCCAGCCTCACTGCCACAGTGGTACACATAAGCAGAGGCAGGTCTCAGATCAGTGAGAGTGACCCTGTGGATGTACATCTTCCTCCCCTCTGATCCTCCATCCACAAACAGAGTAGCTTTGCCCTTGGCTGTCAGCTCAAACAGCCGTCCGCCCCACAGGCCGTACTCCACGGTGCTCTCCTCCGTCTCATTGAATGTGGTCCAGGTGATCTCCATAGAGCCAGCGAACCCTGCATAGGAAATGTGCACCTGCTCAGGCTGGGTCCCAATGGGAGGAACACTAAGCACTAGCAGGGGTGCCAAGCTCAACGCAACGaacacagcaacaacaacagacaccatctTTGCTCTGTCTGGTCGACTTCTGCACAGTcctgaTTATGAATCCCAATAACGTCCAGCAGCCAATTTGAGCCTGGGGACGAGGTTAATGAATCCCCAACAAAGTCTCTGGTCACAGTTCAGGAAAGGAACCGGGGCTTCGTTTGGGTTAAGAAACCAAGCTgaaaaggatagtaaaaccagCCTCATTAGATCAGAATATATGACTTCTTAGAAAGTACATCAACACTGACAGGTAACGTTAGGTGATTGCAG
>TU1862671
CTTCAGTGTTATGCACCTAATTCCAGTCTTTCAGCACAGGATTAAGGCATTTCACAGCTATGCAGGTCATTACAGCAGCGTGTCTTAACCATGGCCCAGGCATGATCTGCTGATGAATAGTAATGGGACGCTAGGGATAAGACTGAGCAGGGTTAGAGTAGCTCTATCTCATCTGTCATCATGGATCTAGCCAGACACCCAGATGGTCTTAAGAGGTCTAGCCTCATGCTGACATAATCCACTTTCATATCTTACCCTGAGGGTACCATAAACTTTGAGTGTGCCCCTTATGCCCATAGCTTAACTTCATGAAAATCTAATGAAAAAGTCCTTAACATAATTGGTATGTGTATCATTCTACCAGCTGATCAGTGATGGACgttgtaacgtgtgtgtgtgcaggaaacAAAAATATGTAGATATTTTACCTCATGCATGTCATATGCAAAGTCCCCAACGTGTAGGATGACATCATACATCCCGACCTGGGTCTCCTTTTGTAGTCTGGCCAGAGACTGAGGGTTCTCATTGCCCATGTCCCCATAGACAGCAAACCTGGGACTCCAGCTAGTGCTCTCATTCAGAGCAGTAAAGGAGAATACATCACTCCAGCCAGCCTCACTGCCACAGTGGTACACATAAGCAGAGGCAGGTCTCAGATCAGTGAGAGTGACCCTGTGGATGTACATCTTCCTCCCCTCTGATCCTCCATCCACAAACAGAGTAGCTTTGCCCTTGGCTGTCAGCTCAAACAGCCGTCCGCCCCACAGGCCGTACTCCACGGTGCTCTCCTCCGTCTCATTGAATGTGGTCCAGGTGATCTCCATAGAGCCAGCGAACCCTAGGGAGAAAAGCCCCATAGTTATCCAGCCAGATCAGGCTGCTCACCTTGCCCACCTGGAAAGAGTTACAGCCCTGGATACTTACTGATCCACTTACGTAAGCTGGGAGAAACTAGCTCAAAAG

Function

NR:

description
acid phosphatase type 7

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1862672 False 1664 lncRNA 0.48 10 44144817 44159762
TU1862671 True 966 lncRNA 0.48 3 44155838 44157118

Neighbor

gene id symbol gene type direction distance location
LOC110497948 NA coding upstream 198143 43944625 ~ 43946674 (+)
LOC110497947 LOC106588052 coding upstream 213445 43927072 ~ 43931372 (+)
LOC110498362 LOC106588971 coding upstream 409409 43695222 ~ 43735408 (+)
LOC110497938 LOC106588908 coding upstream 449886 43684258 ~ 43694931 (+)
LOC110498580 LOC106599766 coding upstream 501339 43638479 ~ 43643478 (+)
zgc:194887 LOC106587488 coding downstream 4270 44164032 ~ 44167404 (+)
LOC118941479 LOC106586952 coding downstream 250487 44410249 ~ 44430245 (+)
LOC110497955 LOC106586878 coding downstream 280380 44440142 ~ 44501752 (+)
LOC110497958 eif2ak4 coding downstream 377744 44537506 ~ 44559873 (+)
cyp1c1 cyp1c1 coding downstream 826910 44986672 ~ 44988391 (+)
G1627834 NA non-coding upstream 3186 44140495 ~ 44141631 (+)
G1627831 NA non-coding upstream 10760 44133230 ~ 44134057 (+)
G1627827 NA non-coding upstream 14470 44130123 ~ 44130347 (+)
G1627825 NA non-coding upstream 15350 44129015 ~ 44129467 (+)
G1627822 NA non-coding upstream 19175 44125345 ~ 44125642 (+)
G1627845 NA non-coding downstream 2836 44162598 ~ 44162957 (+)
G1627837 LOC106587421 non-coding downstream 8312 44168074 ~ 44170132 (+)
G1627852 NA non-coding downstream 20018 44179780 ~ 44180401 (+)
G1627955 NA non-coding downstream 81226 44240988 ~ 44241318 (+)
G1627956 NA non-coding downstream 81621 44241383 ~ 44241711 (+)
G1627319 NA other upstream 328316 43814593 ~ 43816501 (+)
LOC110497931 LOC106589425 other upstream 737690 43279273 ~ 43440028 (+)
G1625710 NA other upstream 1893246 42250731 ~ 42251571 (+)
G1624524 NA other upstream 2107699 42036328 ~ 42037118 (+)
G1624565 LOC100846954 other upstream 2108873 42035353 ~ 42035944 (+)
G1628073 LOC106610840 other downstream 254560 44414322 ~ 44448672 (+)
G1628486 NA other downstream 523600 44683362 ~ 44748925 (+)
G1628488 NA other downstream 528620 44688382 ~ 44747446 (+)
G1628550 NA other downstream 670160 44829922 ~ 44886234 (+)
G1628689 NA other downstream 727109 44886871 ~ 44887173 (+)

Expression

G1627830 Expression in all Baseline Samples

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G1627830 Expression in each Bioproject

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G1627830 Expression in each Sample
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Co-expression Network