G1628126


Basic Information

Item Value
gene id G1628126
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 44515446 ~ 44515964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1862987
CCACATAGCTGATGTGTGTAGTGGGTCGTTAGGGACATCGTATGCACTACATATGCACTTTATCCATGATTTTTATTCCAGATAGTGACCATTGCGCAGTATTCAATCATATCCACATATCCCCTCCCCTCTGTCTATAATGTTTGAGGTCTAAACACCTCAATAACAACTATAGTTTATTTATTGATGTCCTCATAAATATTCCATGACCAGTGCTAAAGGTGTGCAGTGGTAAGGTCATTTGCCTGAGGTTATCAGACACGCTTTTGATTCAACTGAGAGGAATAGTGATATCATGTTGATCAAATTTTGTTATCCAAATTCCGTTACATTGCTATGGATCAATAGTGATATGCCTTCACAAGCTTCTCTTTCCCTTGTAGGTGAGAGTAGTGTCAGCCTGTGGCACAGACATTCTCAAAAAGACAGACAGGGCACCACCTGCTGGATTAAGCAGTCACATAAATCACAGCCAAATCTCATATGAAATACAGTAGTGctgctacactgaacaaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1862987 True 519 lncRNA 0.40 1 44515446 44515964

Neighbor

gene id symbol gene type direction distance location
LOC110497955 LOC106586878 coding upstream 13694 44440142 ~ 44501752 (+)
LOC118941479 LOC106586952 coding upstream 85201 44410249 ~ 44430245 (+)
zgc:194887 LOC106587488 coding upstream 348042 44164032 ~ 44167404 (+)
LOC110497948 NA coding upstream 568772 43944625 ~ 43946674 (+)
LOC110497947 LOC106588052 coding upstream 584074 43927072 ~ 43931372 (+)
LOC110497958 eif2ak4 coding downstream 21542 44537506 ~ 44559873 (+)
cyp1c1 cyp1c1 coding downstream 470708 44986672 ~ 44988391 (+)
cyp1c2 cyp1c2 coding downstream 475504 44991468 ~ 44993957 (+)
LOC110497964 LOC106583112 coding downstream 535196 45051160 ~ 45053552 (+)
LOC110497963 LOC106583053 coding downstream 548273 45064237 ~ 45068205 (+)
G1628028 NA non-coding upstream 161551 44353393 ~ 44353895 (+)
G1627956 NA non-coding upstream 273735 44241383 ~ 44241711 (+)
G1627955 NA non-coding upstream 274128 44240988 ~ 44241318 (+)
G1627852 NA non-coding upstream 335045 44179780 ~ 44180401 (+)
G1627837 LOC106587421 non-coding upstream 345314 44168074 ~ 44170132 (+)
G1628129 NA non-coding downstream 8796 44524760 ~ 44525164 (+)
G1628316 NA non-coding downstream 14572 44530536 ~ 44586188 (+)
G1628425 NA non-coding downstream 94030 44609994 ~ 44610230 (+)
G1628431 NA non-coding downstream 98569 44614533 ~ 44614833 (+)
G1628528 NA non-coding downstream 284428 44800392 ~ 44800701 (+)
G1628073 LOC106610840 other upstream 66774 44414322 ~ 44448672 (+)
G1627319 NA other upstream 698945 43814593 ~ 43816501 (+)
LOC110497931 LOC106589425 other upstream 1108319 43279273 ~ 43440028 (+)
G1625710 NA other upstream 2263875 42250731 ~ 42251571 (+)
G1624524 NA other upstream 2478328 42036328 ~ 42037118 (+)
G1628486 NA other downstream 167398 44683362 ~ 44748925 (+)
G1628488 NA other downstream 172418 44688382 ~ 44747446 (+)
G1628550 NA other downstream 313958 44829922 ~ 44886234 (+)
G1628689 NA other downstream 370907 44886871 ~ 44887173 (+)

Expression


Co-expression Network