G1629014


Basic Information

Item Value
gene id G1629014
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45171899 ~ 45174085 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1863940
CAAGTTATCATATAAGTTTTATTTTAAAGCTTCCAGTGAGGCAGCATCTCATTTACTCATGCTTTGTTAGGTCTTGCTTATGAAATTGTAGCTAGCAAAGACATATCAAATTCCATATTAGCCTACTACAAAATTACAATTTTTTATCACACTGTTTCACTCCTAAACATGTGCAAACAAACAGCTGGTTGATACAAAATATGTGTAGTCTGCTGGTGTGATAAATGAGTAAAGAAGACTGAAACAGTAGATGTAAGGCAGGTAAGGTTACACAGGAGGAAAAGTTATTGGATGTGTTTTTATCTTTCATGTTTGTTGTGTGGCACAAGGTAAGATTTACTCCTTGGTCAGTAATAGGACTTTCTGGCCGACATCATCACAAGGCAACTTACTGATGAGAAGCACTGCATAGATAGATGTAAAGTTACCAACATTACCAGTCAACATTGTTTCAAAGCTACACAAATCTGTTGGgtataagtttttttttttttacccaatatTAGACAGTTTGGGGGTTGCAAACATATGTCACATCATGCCATATCTTTGTGCGTCCATcttgaggagagaggatgtaaACTCTCTAGAACATCTGGATCATGCACTCTCTGGACTTTCCTACACCGACCCACTTAACTGTAGAGAGAAATGACAAAGGATGGGTACTCCAATGTGGTTCTCCACAAAGCGGATGTAGTTCTGAGCCTTCTGGGGGAGATTATTCCACTTCCTGGCTGCAGACGTGTCACTCTTCCAGCCGGGGAAGGTCTCATACTCTACCTCCACTTTGTGCAACAGCTCCATGTCAGCTATGTGAGTGAAGGATGAAGATCATAAATCAGAGGAGAAATgaaatgtttttgtatagataATACTTCATGAATTCTATACATGTCTATTTTACAGGGTAGGCCTAGTTTGGTACAGTACTTTTGAATCGAATTTAGAGAGCATACCTGGGAAATGGGGAATTCTTTTGCCATTGATTTTGTAGGCCACTCCTACTTTGATCTCATCCAGCACATCAAGGATGTCAAGTTTTGTCAAAGCAATGCTTTAAGGAAGCAAtgttatttgtttaacacatttcagGAAAGAGATGAAAACTACTACAAGAGTTACATTCAGAGGAGCAGTCACAGACAGATACAGCACATTGAACAGCGCAGATAaagaaataacaaataaaataactTGCCTTTTGTGAACTAACACTCGCCCCTGACTTTTTTCTcccctactagcactgactttgctgatagttactttatttagaaaaaatatacttactatgactgagatatgtgattgtcccacctagctatcataaaatgaatgcactaactgtaagtctcactggataagagtgtctgctaaatgactaacatgtggAATGTCAATGTAGTAAAGAGTAGGGGATATTCAAAAAGAGTTAAGATTTGGCAGCCTGCCTTTCAGTCATATCCACTCACGCAGTGAAGCCATTGATCATGTGAGCGTATCTCAGGATGACCAGGTCCAGCCAGCCACAGCGACGTTTCCTGCCTGTGGTCACGCCCACCTCATGACCCCTTGTCTGCAGCAGCTCACCTGTCACCTGCACAAAACCCACTCAGTTTAGAATAGATCATTTGATTGATCAATAGTCAAATACTTCTGTGTTGTCCACTTATGGTCACCAGTCTTAATAGTTTTTATTacaaaaaagtattaaaaataaacacttGTGCGGTGGGGgaaatctttgtgggctatactcatcCTTGTCTTAGGGAAGTTagttagtggtctgttgatataatgttggtggtgtgggggctgtgctttgg

Function

NR:

description
adenylosuccinate synthetase isozyme 1 C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1863940 True 1832 lncRNA 0.40 2 45171899 45174085

Neighbor

gene id symbol gene type direction distance location
LOC118941480 NA coding downstream 9070 45158163 ~ 45162829 (-)
LOC110497961 LOC106582929 coding downstream 56213 45055679 ~ 45115686 (-)
LOC110497960 LOC106583292 coding downstream 327993 44821022 ~ 44843906 (-)
LOC110497959 LOC106586563 coding downstream 568088 44561421 ~ 44603811 (-)
LOC110498364 LOC105024319 coding downstream 636157 44532074 ~ 44535742 (-)
LOC110497970 LOC106582697 coding upstream 25748 45199833 ~ 45206903 (-)
xgb LOC106582340 coding upstream 126802 45300133 ~ 45317613 (-)
LOC110497976 LOC106582172 coding upstream 143679 45317764 ~ 45378227 (-)
LOC100136686 LOC106610865 coding upstream 210273 45384358 ~ 45400312 (-)
zfyve19 LOC106582020 coding upstream 249517 45423602 ~ 45427275 (-)
G1628984 NA non-coding downstream 13932 45155827 ~ 45157967 (-)
G1628986 NA non-coding downstream 20264 45150524 ~ 45151635 (-)
G1628996 NA non-coding downstream 48414 45123262 ~ 45123485 (-)
G1628994 NA non-coding downstream 51145 45120369 ~ 45120754 (-)
G1629015 NA non-coding upstream 22437 45196522 ~ 45198313 (-)
G1629023 NA non-coding upstream 34886 45208971 ~ 45209179 (-)
G1629026 NA non-coding upstream 36453 45210538 ~ 45210942 (-)
G1629398 NA non-coding upstream 82439 45256524 ~ 45256754 (-)
G1629399 NA non-coding upstream 83852 45257937 ~ 45258302 (-)
G1627068 NA other downstream 1762790 43408727 ~ 43409109 (-)
G1626324 NA other downstream 2333465 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 2530626 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 2701197 42465705 ~ 42480874 (-)
G1626105 NA other downstream 2916102 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 829680 46003765 ~ 46008718 (-)
G1631005 NA other upstream 1445122 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 1656249 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 2742210 47916295 ~ 47980466 (-)
G1632228 NA other upstream 2794429 47968514 ~ 47970332 (-)

Expression

G1629014 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
End of interactive chart.

G1629014 Expression in each Bioproject

Bar chart with 16 bars.
G1629014 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network