G1628865 (LOC105030512)


Basic Information

Item Value
gene id G1628865
gene name LOC105030512
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45186962 ~ 45194241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1863779
GTTCACAGTTGTGGACATACCCGGATGTGCAGATTACCAGTCTAACAGGATTCAGTCATGTCACCCAGGCCCTAGCCTGCTCCTTTGGACACTTGTGTAAATCATAATGGATTGTAATACTCTAAAACCTGAATAAGGCACTAAAGCCAGTGCAAAATATACCTGCTAAATCTTGACTGGAACCTCAAATGCGGTCATATTACTCCAGTATTAGCATCTACGCTGGCTTCCTGTTATGGCtaaggctgatttcaaggttttactggtAACTTACAAAGTATTTCATGGACTTGCTAAGATTTGGTCCTGCCCTACATATACTTACTCTACGGTTATAGATGCAGGCCTCATTGTTCCtacaatttctaagcaaacaactGGAGACATGGCTTTTTCCTATAGAGCCTCTTTCTTATGGAATGTTCTGCTGATCCATATGAGAGACGCAgactgtctcaacctttaaattAAAGTTCtgggatactggccttctaggcaaagttgcaaagaaaaatctaTCTCGGACtggccaaataaaataaaatattaagattggCCAacgaacagacactggacagaggaaccatgctccagatactcaactagtctaaagcatgccaattttattgcttctttaatcagaacacagttttcagctgtgctaatgtaattgcaaaagagttttctaatgacaaattagcctttaaaatgatcaattggattagctaacacaacctgccattggaacacaggagtgagagttggtgataatgggcctatgtagatattccattttaaaaaatctCCCGTTTTTAGCTGCAATAGTCacgacattaacaatgtctacacagtatttctgatcaagttattttagtttttagttttctttcaaaaacaaggacatttctaagtgacctcaaacttttgaacgtgtGTGTGGAAGCCACttgaaatgagtggatttggctatttcagccacacctgttgcggacaggtataaaatcgagcacacagccatgcaatctccataggaaaacattggcagtagactggccttactgaagagctcagtgactttcaatgtggcactgtcatatgACGCAACAattcagttcatcaaatttctgccctgctagagctgccccggtcaactaagtGCTGTTGTGAAGTTGGAAGTCTAGGCGCGACAATGGCTCAgcagtgaagtggtaggccacacaagcttacagaacaggaccgccaagtgctgaagcgcataaaaatcgtctgtccttggttgcaacgcACTGCTAAGTTCCAAAAACGTTTGGGAGCTttttgaaatgggtttccatggccgagcagccacataCAAGCCCAAAATCACAATGACAAGtgtctgctggagtggtgtaaagctcgctgccattgggctctggagcagtggtaatgtgttctctggagtgattgtcggctaatggggatcctaataaatcaaattaatcatgcttcaccatctggcagatcGAAGGATgaatttgggtttggcggatgccaggagaacaccacCTGCCCAAATGcaaagtgccaactgtaaagttttgttcgggctaggcccctaagttccagtgaagagatcttaaaacatcATTGGACttttattgttttattctgtgttacagcattcaacccacaaaatgcattttatgttaaaaaaatatattttgtattacgAACTGGCTGGTTCAAGACCTGAATGCTGATaaactgacagctgtggtatatcagactgtataccacaagtatgacaaaacattcatttttactgctctaattacgttggtaaccagtttataatagcaataaggtacctcgggggtttgtaaactcagcaaaaaaaggaacgtccctttttcaggactctgtctgtcaaagataattcataaaaatccaaataacttcacagatcttcattgtaaagggattAAACACTTTtcccccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacagtcgttaagacactaacagcttacaggcggtaggcaattaaggtcacagttatgaaaacgtaggacactaaagaggcctttctactgactggaaaaacaccaaaataaagatgcccagggtctctgctcatctgcgtgaatgtgccttaggcatgctgcaagaaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacgcctaagacagggagacaggcggacagctgatcgtcctcgcagtggcacaccacgtgtaacaacacctgcacaggatcggtacatccaaacatcacacctgcgggacaggtacaagatggcaacaacaactgcccgagttacaccaggaacacacattccctccatcagtgctcagactgttcgcaataggctgagaaaagcaggactgagggcttgtaggcctgttgtaaggcaggtcctcaccagacaccaccggcaacaacatcgcctatgggcacaaacccaccatcgctggaccagacaggactg

Function

NR:

description
PREDICTED: uncharacterized protein LOC109630516

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1863779 True 2563 TUCP 0.43 2 45186962 45194241

Neighbor

gene id symbol gene type direction distance location
LOC110497967 adssl2 coding upstream 12877 45166900 ~ 45174085 (+)
LOC110497965 LOC100380739 coding upstream 28992 45151526 ~ 45157970 (+)
LOC110497966 LOC106582786 coding upstream 39762 45129015 ~ 45147200 (+)
LOC110497963 LOC106583053 coding upstream 118757 45064237 ~ 45068205 (+)
LOC110497964 LOC106583112 coding upstream 133410 45051160 ~ 45053552 (+)
LOC110497971 LOC106582637 coding downstream 22760 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding downstream 48662 45242903 ~ 45242978 (+)
LOC110497972 LOC106582486 coding downstream 71857 45266098 ~ 45291658 (+)
LOC110497973 LOC106583826 coding downstream 97464 45291705 ~ 45296375 (+)
LOC110497977 LOC106582390 coding downstream 104205 45298446 ~ 45301424 (+)
G1628861 NA non-coding upstream 68307 45118452 ~ 45118655 (+)
G1628840 djc17 non-coding upstream 92632 45086882 ~ 45094330 (+)
G1628783 NA non-coding upstream 146430 44978898 ~ 45040532 (+)
G1628781 NA non-coding upstream 215658 44971092 ~ 44971304 (+)
G1628737 NA non-coding upstream 264633 44922098 ~ 44922329 (+)
LOC110497969 siva1 non-coding downstream 1671 45174289 ~ 45198342 (+)
G1629028 NA non-coding downstream 17652 45211893 ~ 45212120 (+)
G1629047 NA non-coding downstream 62659 45256900 ~ 45257116 (+)
G1629069 NA non-coding downstream 116635 45310876 ~ 45377620 (+)
G1628689 NA other upstream 299789 44886871 ~ 44887173 (+)
G1628550 NA other upstream 300728 44829922 ~ 44886234 (+)
G1628486 NA other upstream 438037 44683362 ~ 44748925 (+)
G1628488 NA other upstream 439516 44688382 ~ 44747446 (+)
G1629134 spit1 other downstream 202590 45396831 ~ 45399822 (+)
G1629200 NA other downstream 307553 45501794 ~ 45502263 (+)
G1629210 NA other downstream 321933 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 819483 46013724 ~ 46016639 (+)

Expression


Co-expression Network