G1630229


Basic Information

Item Value
gene id G1630229
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46806636 ~ 46808763 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1865285
ATTTTTAATACAGTTTATTCTCCGCATTTTGAGCTGAAATGCTTAGGAAACCTAAGGTAGGAGACATGTTCTTTTATGCAGAAAATAAGAGGATTTGATAAGCACAGTATGGAGATGTGCATGGTATAGAGATTAAGAGAGAATTGTTGATCAGTCCAACAAAGAAATACGTACCACTTCTGCACACTTCTGGTGGAGGCTTCTTGATATCCGATAGGATAACGTTTTCTGTTCCGTACTGTTTCCTACACATTGATATTCAATTAATTTCTGCAATTTCAGTTCATTCCTGAATTTAACTGGAGTGAACCCCAGAATCCAAACGATCTATTTGTAGATGTTAAATGAGAATTCTACAATCTGGGGAAGATTCAGGCTATCAACATCTCTTACCCTTTGACGAAAAGATTGCTCTTTAGTTTTTTCTCACCTCAGGATTTCTGCAAGCCCCACACCTAACTGTCCAAGGCCACCTTTCCatgaagataaaataaataatacaatgcAGAATTAATAAAACACACCATCTCAATTGTTAATTTGTATTTGCTCAAAAGGTCTCAAAATTGAGAATATATGGGTGAAAATGTGTTTCTTGTATACAATATCAGAAAAAAATTGGTCTGGATGTTTTTTTCATATTCTGCTCCAACCAGGCTGTGACCTTTTTTTGTTTTCACCAAAGCTTTATGTAGCCTACAGACAAAAACTGTCCTCAAGCTATTATTCTGCCAGTGGTCACTCGCTGGGGCCTTTTTGTCCCTAGCACAGTCTGCTCACAGCCTATTGTAGTGAGGGAAAATAGGATTGCCACTTACTAAACAGTGAACACAAATCTAAATGACAAAAACGAGATTGACAACATGCCATTACCATTACTTAAAACATTTCAACAAATGGTTATATTTtcataaacaaatcaaatgtatttataaagccatttttacataagcagatgtcacaaagtgcttaaacagaaacccaggctaaaaccccaaacagcaagctatGCAGATATAGAAGCACGgtggataggaaaaactccatagaaaagcaggaacctaggaagaaacctagagaggaaccaggatctgaggggtggccagtcatcttCTGGTTGTGTCGGTTGGAGATTATAAACACGTATAAAGCATATATAGCCTATAGTCCATAAAGTGTTATTtgctatttgagattttttttaaatacaatttaaaaaatggttTAACCTGTGATGAGAATTCGTGGGTTCTCCGCAGGAGGTAGGTCAATGGAATCTTGACTGTTCCACCGGCTGATCTTTCGGGGCGACCAACTAAAACCCCGGAATGACAAACTACGTGCCCAGCTGCGACAGCCATGGCACAACGAGCCGAATAGAGCTGCAGCGGAGGGCACACAGACCCGCATACCCGATAGCATGTCGAGCTGCTGCCCCTGAGGAAAAAGTTCGATCAAAGACAAGAGGCTATGTTATCAGTTTCATCCGTCAAATCAATCTTTCTCAGTAGGAAATTACACAACGTAGGTTATAGACACTATTAATTCTACGGATTTATGTAAATTTACCATGTTAGGTTTAGGCCAATAAGTTAGTTATGTAACATTGTTGTTTCATTTAAAACATAAACTTTCTAGTGTTCGTATTGACTGGAACACCACGCGTTATGTATCAGAAGAATTAATAGAAAACATTTTACCTGTGTGCTGACAAAAACCTGGAATCTGTCTCTGTTGATCGTGCCAACCACTTGTTGACCAAAATGAAGCTTTACAGATCGCACAAGCGCTTCCCACACTAGGCTAATAAACTAATTGATGTAAATTGCGCTGATAAAACGTTTTTCGTGGTATTTAACTCTTAGAATTAAAAGATTAGGCTACCCCCCGATTGGTCACTGAATAAGCGCACCGAGCATCCATTGGGTAACTAAATGGCTGAAGAAAGTCATGCTGGGATACGTGGTTTTCCTCGTTATGATGTAAGAACGCGAGAGGTCACGACTCAATTGTAAATTACTACAATATCCAGCCTGCTACGCTATAGGGCCAACAAGTGGGCAAACATGCTGACTACCTGCTCACAGGGGATTTGTATTGTTGTAATGTTGAACAGGGCTGCAGTGTA

Function

NR:

description
L-threonine 3-dehydrogenase, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1865285 True 2128 lncRNA 0.39 1 46806636 46808763

Neighbor

gene id symbol gene type direction distance location
LOC110498012 LOC106579491 coding upstream 88490 46635957 ~ 46718661 (+)
rhd LOC100136695 coding upstream 344886 46458273 ~ 46461750 (+)
LOC110498004 LOC106580093 coding upstream 489983 46257919 ~ 46318609 (+)
LOC110497998 NA coding upstream 822547 45970660 ~ 45984089 (+)
LOC110497997 LOC106580683 coding upstream 846311 45929326 ~ 45960769 (+)
fam167b LOC106610812 coding downstream 10358 46819121 ~ 46824076 (+)
LOC100136287 LOC100136287 coding downstream 24996 46833759 ~ 46849435 (+)
LOC110498019 hdac1 coding downstream 40810 46849573 ~ 46858039 (+)
pabpc4 LOC106578531 coding downstream 70411 46879174 ~ 46895034 (+)
ppie ppie coding downstream 87112 46895875 ~ 46903367 (+)
G1630228 LOC106579056 non-coding upstream 1164 46805217 ~ 46805472 (+)
G1630227 NA non-coding upstream 1733 46803853 ~ 46804903 (+)
G1630224 NA non-coding upstream 18718 46787639 ~ 46787918 (+)
G1630223 NA non-coding upstream 19039 46787119 ~ 46787597 (+)
G1630221 NA non-coding upstream 20928 46785440 ~ 46785708 (+)
G1630233 NA non-coding downstream 9397 46818160 ~ 46818419 (+)
G1630236 NA non-coding downstream 18676 46827439 ~ 46827651 (+)
G1630237 NA non-coding downstream 19216 46827979 ~ 46828292 (+)
G1630245 LOC106562530 non-coding downstream 21215 46829978 ~ 46830321 (+)
G1630239 LOC106578367 non-coding downstream 123428 46932191 ~ 46934633 (+)
G1629912 NA other upstream 580816 46225382 ~ 46225820 (+)
G1629779 LOC106580335 other upstream 789997 46013724 ~ 46016639 (+)
G1629210 NA other upstream 1289988 45516174 ~ 45516648 (+)
G1629200 NA other upstream 1304373 45501794 ~ 45502263 (+)
G1631702 NA other downstream 851363 47660126 ~ 47661235 (+)
G1631844 NA other downstream 938934 47747697 ~ 47749082 (+)
LOC110498044 LOC106575475 other downstream 1315185 48122225 ~ 48129380 (+)
LOC110498372 LOC106575065 other downstream 1770015 48251112 ~ 48583066 (+)
LOC110498046 LOC106574720 other downstream 1780862 48588944 ~ 48678169 (+)

Expression


Co-expression Network