G1632650 (arhgef10)


Basic Information

Item Value
gene id G1632650
gene name arhgef10
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48699057 ~ 48700568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1868002
GCACAAAAGTATAAagctttagatacattttttaaatatcctTTAGTGACAATACATGTATTTGAGCAAGTAACAACCCCTTATTTTCATCTGATAACAGTTAGAGACTCTCCCTCCATTTAGGATCTACTGGAAACCTGGCCAGCCAGGAAGTCCCATCATACCTCATATCAACAACCACTCACCCTCCATAGCCACCTGATGACAACATAAGCACACTTTAAGCGTCAGTGTACCAATGAAATATGGGCACCATTGCGGACAAATGATCTCTCCCTGACCCAATAACAAACAAGTAAACATATCTATTAACAGACCCAATTCATAGAACATAGCCCGGCCAATGGATATGATCATGAGAAGGCTTTGGCCCCAAATAATGCCTGTTCCTAACAGTGGAAGTGTCGGAGTAGACATTGTTGCCTGGCTTTCCTCAAATTCTGTCTACGTAGGAAAATGGGAATGTCTGATGTCTATCTATGTGATTAGCCCGGATACAATTATTGTGCCATCAACACTCTGGTGATCAGTCACACAAAATATTAGCCATGTTATAACAAGAACATTTCATCGGTCCTCTCTCAAAATGACATAATATGAATGACATTAGGGACATTTCAGTGGTTTTTCTACATATTCAGGTTCTCTTCATTGGATTCAAGTCAGGTGCCATTATTAAGTGGTTAAAGTGTATTGATCCATTTGTACCCATTACCCAATAGGAATGTCCCACATGAACAGAAGGTCACTGGGTAGGAGATATCAGAAACTCTTGCTATTATTCATGTGATGCCCTCTGGAGTATTTCTCATTATAAGACACATAGTTGAGTTGATTGATCCCAAAGTCCAGACAACCATGGGAATTAATGGATATCCTTTGGAGTGTCACTGAGTCAAGTGTCACTGATATCAAGTAGGAACTGCAGCATCCTCAGTCTTGTTACACTGTACTAGTTAGTCTCtactctctggtctctctcacaTGTTGAGTAGAGGGATCTGCCACACCATGATGTTGGACACCGTCTCCTCCTGACGGGACTGTTTGGTCTTCCTGTTGACCCTGTGGTGACCCAGCCCCCCTGAAACCACCAGTAGAGAGCTGACGTCCACCTTCTGGACCCTCCTGCCCCTCTGGTGGTGGGCCGGATCATTGACCAGGTCATAGATGGCCCCGTCCTCGAGCCCGTGCTCCAGAGAGCCCTGGGACAGAGCCAGGGAGccacaggaggaggacagggagtcCTGGAGGGCCATGGAAGTGCAGCCTGCCTCCCCTAGCCACACTCCCCGGCCCCGGGTGGGAGCTAGAGTGGGTGTGGAGCCTGGGGTTGGAGGTGGGGAGGCCTGGGCCTTCTCCCCGTCCTTGGGGCCTCCTGGCTGGCTAGGTAG

Function

symbol description
arhgef10 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in actin cytoskeleton organization; mitotic spindle assembly; and positive regulation of stress fiber assembly. Predicted to act upstream of or within myelination in peripheral nervous system and regulation of Rho protein signal transduction. Predicted to be located in cytosol. Predicted to be active in centrosome. Orthologous to human ARHGEF10 (Rho guanine nucleotide exchange factor 10).

NR:

description
rho guanine nucleotide exchange factor 10-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1868002 True 1394 TUCP 0.47 2 48699057 48700568

Neighbor

gene id symbol gene type direction distance location
LOC110498046 LOC106574720 coding upstream 20888 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 coding upstream 116509 48251112 ~ 48583066 (+)
LOC110498048 NA coding upstream 134729 48561566 ~ 48564328 (+)
LOC118941486 NA coding upstream 532313 48160753 ~ 48166744 (+)
LOC110498044 LOC106575475 coding upstream 569677 48122225 ~ 48129380 (+)
LOC110498051 NA coding downstream 86651 48787219 ~ 48792402 (+)
LOC110498053 erich1 coding downstream 429102 49129670 ~ 49155002 (+)
zgc:193593 NA coding downstream 460137 49160705 ~ 49178402 (+)
si:ch211-195o20.7 LOC106574021 coding downstream 470882 49171450 ~ 49192439 (+)
LOC110498056 LOC106573945 coding downstream 499525 49200093 ~ 49218555 (+)
G1632645 NA non-coding upstream 24967 48673634 ~ 48674090 (+)
G1632597 NA non-coding upstream 114093 48584750 ~ 48584964 (+)
G1632595 NA non-coding upstream 126244 48572499 ~ 48572813 (+)
G1632594 NA non-coding upstream 126624 48572170 ~ 48572433 (+)
G1632722 NA non-coding downstream 152470 48853038 ~ 48853247 (+)
G1632762 NA non-coding downstream 216009 48916577 ~ 48916897 (+)
G1632764 NA non-coding downstream 221916 48922484 ~ 48922710 (+)
G1632765 NA non-coding downstream 222254 48922822 ~ 48923115 (+)
G1632768 NA non-coding downstream 228760 48929328 ~ 48929659 (+)
G1631844 NA other upstream 949975 47747697 ~ 47749082 (+)
G1631702 NA other upstream 1037822 47660126 ~ 47661235 (+)
LOC110498072 NA other downstream 1463271 50163645 ~ 50168749 (+)
LOC110498078 LOC106572417 other downstream 1543051 50243497 ~ 50265945 (+)
G1634948 NA other downstream 1906818 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 3874365 52561723 ~ 52576154 (+)

Expression


Co-expression Network