G1633019


Basic Information

Item Value
gene id G1633019
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49326663 ~ 49370871 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1868393
ttttttttttttGTAACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGTTTCAGAAATAAATAAGAAAATAAGGCTGTGGAATTCACAATGTGCAGTTAAAACATGAAAAGGCAATTCTATGTCCATAGTCTTGCAAACAAATTCCAACTGCATTTGGTATTGATACAAAACAATAACtatattctgatttgtttttgttttgttgaaatcTTAAATATACAACACAGACAGGCAACTCCACCTTTGGGAAAAATCAGCTGTGAGTTAGTATTATAAAAAAAGATACACATTTGGTCTAAAGTAACTCATTGAAAGCCTGATTTGATAATAGCTGGGAATCTTTGGGAACTTTTAATGGAGCTGGAACCAGTAACCCTCTTTCTGATGAAGAGGGTCACCAACTACATGATTTCAAAAGAACAACAGGCAGCTTGACATTGTGAAATTTGAAATGAACTGTGAGGTACAGGGCTAATGTGGAGGGGTACAGAGACATACATATACCTTCCCCAACGTATTTGCTGACTTTCCGATGATTAGTGCATTAAACATTGGACTCTAACACTTAATGCAGTTATGTTACAAGCAGAGACACTTAAAGAAACAGTTAGCAAGCACACAGGTTTGTAATGAAATAATGTCCAGATTCATTATATTTCCACTTAATCTTGCTAAACTTAATTTGTTGATGCGTAAAGATATGTTCAATAAAGCCAAGGGTATCAGACCCATATATTTTATTCTCTGAATATCACTTAATAATCGCACATGTAATAATGGAGATAAATTCAATATAAcaatcctttgttttgtttttgtttatggTGCTATCCTCTCGGTATCGTCTCTTGATAGTGACCTCTTTCCTCTCGGGTTTCGTGAGTAACCAGGCGACTGTATTGCCTCAGATTCATCTTCCGGTTCTTCCTCAGGTATAGGGACTAGGTAGGTTTCAGGGTCGGGCTCGTAGCCGGTGGCTAGAAACATTAGTTTGGCCAATCAAACAGGACTTTAGTCAACAGGCTGAGACTTAACATGCACAATGTACATCCTAAACGTTTGTCCTAAACATGAATAATCAACCAACGTATTGAATGTATGGACCAAAGAACTGTCATTAATCTTGCTTGTATGTTAGAGTGATTACATGCACTCCTGAACTTAATGTTATTGAGGAATATGAACCATATTGAACACATACATAAAGATAAATACCACTTCAAGTAATAAAGCTGGGATTGATTTGTAACAAAACACTAATACAACACTGCCACTTGTCTCTagctctatcctatccttttGCTACTCCTAAAACCCATTGTGGTGTTACACAAATGTTCCTCAGCAAATTAActaatatatatatgtacactaccgttcaaaagtttagggtcacttagaaatatccttcttattgaaagaaaagcacattttttgtccaataaaataacatcaaattgatcagaaatacagtgtaggcattattaatgttgtaaatgactattgtagctggaaacggcagattttgtatggaatatctacataggcccattatcagcaaccatcactcctgtgttccaatggcacattgtgttagctaatccaagtttagcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgccgtgctgattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcagaatttgtgggttcgattacaggctcaaaatggccagaaacaaatactttCTTCTAAAAccagtcagtctattcttgttctgagaaatgaaggttattccatgcgagaaattgccaagaaactgaagatctcgtacaatgctgtgtactactcccttcacagaacagcgcaaactggccctaaccagaatagaaagaggagtgggaggcccccggtgcacaactgagcaagaggacaagtacattagagtgtctagtttgagAAACAGAAGAAAATGGTAGGAAAAGAACATTTAGCATAGGTTAGGCAAACATACAAAGAATATCATGATTAAATGTACAACTGTCACATGCTTCGGTTAGGACCGGAGCACAAGCTGTGTAAATCACAGGCCTCATACTGTAATAAAACAGAGGTTATGCTGGCAGTAAGTCAGTAAGAAGCGGGTTATAAGGCACAAGCTCAATACAGATGTTAAATGATTTTAGTGGATTGTGTGATTCAAACATAATTTACAAGGCACAATTAGTTTATTTACAGATATCACCTCTACGTCAACATGTTAACACTTGTTCTTTTGCTAAGATATCCACTTTGTTAGtagtttttggtttgtttgtttttttacatgctCCTTCCGGCGTAGAGaagcactctctctctgtttgctgGGGTTTTGGTTCAAGATGCAAACAGGCCAGTAGGGTTGCCATCTCTGCAGCTTGTCTGATAGTAGCTGTGAAGTGGTGTTAGTGCGAGTCCACTCCTTTCTGTCTCGTTTTTGGGCTTTTAACGTTGTTCATTAATTATGTCCCCGGTGGTTATCCTTAAGGGCTCATTAGCCAGTGAGCTAACATCTCAGAAACAGGACTGTAAGCAGCACAGGCAGCATAGAGAGTTTACTAGGACCGAC
>TU1868394
ttttttttttttGTAACATTTTCAGTAGTTTTATTGAAAAATGCCTCTTCTGTTTCAGAAATAAATAAGAAAATAAGGCTGTGGAATTCACAATGTGCAGTTAAAACATGAAAAGGCAATTCTATGTCCATAGTCTTGCAAACAAATTCCAACTGCATTTGGTATTGATACAAAACAATAACtatattctgatttgtttttgttttgttgaaatcTTAAATATACAACACAGACAGGCAACTCCACCTTTGGGAAAAATCAGCTGTGAGTTAGTATTATAAAAAAAGATACACATTTGGTCTAAAGTAACTCATTGAAAGCCTGATTTGATAATAGCTGGGAATCTTTGGGAACTTTTAATGGAGCTGGAACCAGTAACCCTCTTTCTGATGAAGAGGGTCACCAACTACATGATTTCAAAAGAACAACAGGCAGCTTGACATTGTGAAATTTGAAATGAACTGTGAGGTACAGGGCTAATGTGGAGGGGTACAGAGACATACATATACCTTCCCCAACGTATTTGCTGACTTTCCGATGATTAGTGCATTAAACATTGGACTCTAACACTTAATGCAGTTATGTTACAAGCAGAGACACTTAAAGAAACAGTTAGCAAGCACACAGGTTTGTAATGAAATAATGTCCAGATTCATTATATTTCCACTTAATCTTGCTAAACTTAATTTGTTGATGCGTAAAGATATGTTCAATAAAGCCAAGGGTATCAGACCCATATATTTTATTCTCTGAATATCACTTAATAATCGCACATGTAATAATGGAGATAAATTCAATATAAcaatcctttgttttgtttttgtttatggTGCTATCCTCTCGGTATCGTCTCTTGATAGTGACCTCTTTCCTCTCGGGTTTCGTGAGTAACCAGGCGACTGTATTGCCTCAGATTCATCTTCCGGTTCTTCCTCAGGTATAGGGACTAGGTAGGTTTCAGGGTCGGGCTCGTAGCCGGTGGCTAGAAACTGGGTAACCTTGTCCATTGTAAGGAATGCCAACACACTGGGAGGAGTCGCAGTAGCCAGGGGGTCCAGGTGGTCCCCTCACTCCTGAGGTTCCCTGGCGACCAGGAGGGCCCCGAGGCCCAGCAGAGCCCGTAGTACCTGTGGCGCCGGTTCGAGCCTCGCCTGGTGGCCCTGGgagtagggagagggagatgggttgTGGAAAATAATTAAAGAATAGTCAGAACGAAACCTCCCTGACATCACCCTTAAATCCCAACTGGAAGTGGAGGGGGGGACTATTGGTTTCTACCACTGTAATTTCAATATTTAGACGGCTCAATTAAAAGTCTGATAAGAAGTGAGCCAGGGCTCTGGTGAGTTACTCCCTGCCCCTGTCTGTCTAGACAGTACAAACAAAGGATGGAATTTCCtccactctctcgctctgtcttgcTCTTTGATCTCTTAAGTGAGCACATGTGTTGTCAATGAAGGAGCCACCAAAGCAACGCTCATTGTACAACAATCTGATTCTCCCACTCAACAATGAGTCATCATCGCTAGCTAACTAGCTTCCTCCTACAGGAGTTTAGT

Function

NR:

description
collagen alpha-1(XII) chain-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1868393 False 2660 lncRNA 0.37 3 49326663 49369912
TU1868394 True 1565 lncRNA 0.41 3 49326663 49370871

Neighbor

gene id symbol gene type direction distance location
LOC110498056 LOC106573945 coding upstream 108108 49200093 ~ 49218555 (+)
si:ch211-195o20.7 LOC106574021 coding upstream 134224 49171450 ~ 49192439 (+)
zgc:193593 NA coding upstream 159117 49160705 ~ 49178402 (+)
LOC110498053 erich1 coding upstream 171661 49129670 ~ 49155002 (+)
LOC110498051 NA coding upstream 534261 48787219 ~ 48792402 (+)
LOC110498063 LOC106573328 coding downstream 194985 49565856 ~ 49611711 (+)
LOC110498066 LOC106573019 coding downstream 384097 49754968 ~ 49926745 (+)
LOC110498067 LOC106572928 coding downstream 556833 49927704 ~ 50024509 (+)
zgc:113142 LOC106570820 coding downstream 666894 50037765 ~ 50068382 (+)
LOC110498069 LOC106572557 coding downstream 717395 50088266 ~ 50144649 (+)
G1632870 NA non-coding upstream 214025 49111942 ~ 49112638 (+)
G1632778 NA non-coding upstream 379175 48947289 ~ 48947488 (+)
G1632774 NA non-coding upstream 384675 48941749 ~ 48941988 (+)
G1633072 NA non-coding downstream 34608 49405479 ~ 49407939 (+)
G1633087 LOC106573748 non-coding downstream 55440 49426311 ~ 49453984 (+)
G1633107 NA non-coding downstream 86211 49457082 ~ 49458853 (+)
G1633114 NA non-coding downstream 99459 49470330 ~ 49470546 (+)
G1633115 NA non-coding downstream 100607 49471478 ~ 49471750 (+)
G1632650 arhgef10 other upstream 626095 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 648508 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 other upstream 747007 48251112 ~ 48583066 (+)
LOC110498044 LOC106575475 other upstream 1197283 48122225 ~ 48129380 (+)
LOC110498072 NA other downstream 792968 50163645 ~ 50168749 (+)
LOC110498078 LOC106572417 other downstream 872748 50243497 ~ 50265945 (+)
G1634948 NA other downstream 1236515 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 3204062 52561723 ~ 52576154 (+)
G1637065 NA other downstream 3379729 52750600 ~ 52755474 (+)

Expression


Co-expression Network